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GrainGenes Sequence Report: Z17327

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Sequence	Z17327
Subsequence	Z17327_1.cds 3392 7292
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC189427
DB Remark	Locus Source: Hordeum vulgare subsp. vulgare
Keyword	BARE-1 element copia element transposable element
Species	Hordeum vulgare subsp. vulgare
Developmental Stage	7-day old seedling
Data Source	genbank Release 135, Apr 15 2003
Title	H.vulgare DNA for BARE-1 copia-like retroelement.
Strain	NK 1558
Probe	HvBARE3 HVBARE1
Gene Product	putative aspartic proteinase
Remark	DB_xref: taxon:112509 [ Show all 19 ]
EMBL Feature	TATA_signal 1293 1299 Location: 1293..1299 [ Show all 24 ]
DNA	ttgtgttctcccatatgtgcatcgttgcgaaggttcatcgtttcaagaca tcacgtgatgatcgggtgcgatagactctacgttcgcatacaacgggtgt aagccagttttacacatacataacacttgggttaaacttgacaagcctag catgtatagatatggacttggaacacaatagaccgaaatgtcgaacatga gtcacatagtagatatgatcaatacggagatgttcaccattgaaaccacc tcatctcatgtgatgatcagacttggattggtggatatggatcatgtcac actcgaactgttggaattatgccctagaggcaatgataaataatttatta ttataattcatgtatcaagataatcgtttattatccatgctataattgtg ttgaatgaagacttagatacatgtgtggatacatagacaaaatactgtcc ctagcaagcctctagttggctagccagttgatcaaggatagtcagggtct tctggctatgtacaaggtgttgttgcttgatgactggatcacatcatcgg gagaatcatgtgatggactagacccaaactaatagacgtagcatgttgat cgtgtcattttgtagctactgttttctgcatgtcaagtatttattcctat gaccatgagatcatataactcactgacaccggaggaatgctttgtgtgta tcaaacgtcacaacgtaactgggtggctataaagatgctctacaggtatc tccgaaggtgtccgttgagttagtatggatcaagactgggatttttcact ccgtgtgacggagaggtatctcggggcccactcggtaatacaacatcaca cacaagccttgcaagcaatgtgacttagggtaagccacgggatcttgtat tacgggacaagtaaagagacttgccggtaaacaagattgaaataggtatg cggatactgacgatcgaatctcggggcaagtaccataccgaaggacaaag ggaatgacatacgggattatatgaatccttgccactgaggttcaaacgat aagatcttcgtagaatatgtaggatgcaatatgggcatcaaggtcccgct attggatattgaccgaggagtccctcggtcatgtctacatagttctcgaa cccgcagggtctgcacacttaaggttcgacgttgttttatgcatatttga gttatatggttggttaccgaatgttgttcggagtcccggatgagatcacg gatgtcacgagggtttccgagatggtccgaaaatgaagattgatatatag gatgacctcatttgattaccggaaaggtttcggcattaccgggaatgtac cgggagtgacgaatgggttccggatgttcaccggggagggggggcagccc actccagggaagcccataggccttaggggtgccacaccagcccttagtgg gctggtgggcaagcccaagaaggctcctgcgcaggataagagaaaatcaa acagaaaaggaaaaaaaagggaagtggggaaagagaggaggactccacct tccagtcctagttggactaggattggaggaggaatcctcctccccccttc gaccgaaccccttggggctccttgagcctcaaggcaaggcccctcccctc cctcctatatatactgaggtattagggctgatttgagacaacttttccac cgcagcccgaccacatacctccacggtttttcctctagatcgcgtttctg cggagctcgggtggagccctgctgagattagatcaccaccaacctccgga gcgtcgtcaggcttccggagaactcatctacctttccgtctctcttgctg gatcacgaaggccgagatcaccatcgtgttgtacgtgtgctgaacgcgga ggtgtcgtccgttcggcactagattagagcggatcgtgggacggatcgcg ggacggttcacggggcggatcgagggacatgaggacgttccactacatca accgcgtttattaacatttctgttatgcgatctacaagggtacgtagatt tgaaatccccctcatagatggacatcaccatgacaggtcttcgtgcgcgt aggaatttttttgtttcccatgcgacgttccccaacattggcatcgtgag ctaggttcatgcgtagatgtcatctcgagtagaacacaaatttttttgtg ggcggtgatgtgtgatttgctgccctccttagtcttttcttgattccgcg atattgttggatcgaagcggctcggaccgacattactcatacgcttacga gaggctggtttcatcgctatgagcaaccccgttgctcaaagatgactgac gagtgtcggtttctccaactttagttgaatcggatttgaccgaggaggtc cttggatgaggttaaatagcaattcatatatctccgttgtggtgtttgcg taagtaagatgcaatcctactagatacccatggtcaccacgtaaaacatg caacaacaattagaggacgtctaacttgtttttgcagggtatgcttgtga tgtgatatggacgacgatgtgatgtgatatattggatgtatgagatgatc atgttgtaatagttaatatcgacttgcacgtcgatggtacggcaaccggc aggagccatagggttgtctttaaactaatgtttgtgcttgcagatgcgtt tactatattgctaggatgtagctttagtagtaatagcatgagtagcacga caaccccgatggcgacacgttgatggagatcatggtgtggcgccggtgac aagaagatcatgccggtgctttggtgatggagatcaagaagcacgtgatg atggccatatcatgccacttatgaattgcatgtgatgttaatccttttat gcaccttattttgcttagaacgacggtagcattatgaggtgatctctcac taaaatttcaagacgaaattgtgttctcgccgactgtgcaccgttgctac agtttgtcgtttcgagacaccacgtgatgatcgggtgtgatagactgaac gttcacatacaacgggtgcaaaacagttgcacacgtggaacactcgggtt aagcttgacgagcctagcatgtggagacatggtctcagaacacatgagac cgaaaggtcgatcatgaatcatatagttgatatgattagcatagggatgc ttaccactgaaactatcctcaactcacgtgatgaccggacttgagctagt ggaattggatcatgaaccactcaaatgactagagatatgtactttttgag tgggagtttagcaagtaatttgattaagttaaactctaattatcttgaac atagtctaagtccactttgaatatatttgtgttgtagatcaatggctcac gcgagagtcaccctgaattttaatacgttcctagagaaagctaagttgaa agatgatggaagcaactttgtagactgggctcataatctaattaagttgc tcctgcaagctgggaagaaggattatgtccttaatgctgcgctaggagat gaaccacccgctacggctgaccaagatgttaagaacgcttggttaacacg taaggaggactactcagtagttcaacgtgcagtcttgtatggcttagagc cgggacttcaacgtcgctttgagcgtcatggagcatatgagatgttccag gagttgaagtttatctttcagaagaacacccggatcgagaggtatgagac ctttgataaattctatgcttgcaagatggaggagaattcgtctgtcagtg aacatgtgctcaaaatggctgggtactcaagccgtctagctgagctgggg attgaactcccgcaagaggctatcactgacagaattcttcaatcactgcc gccaagctataagggctttttgttgaactacaacatgcaagggatgaaca agtcacccggcgagttgtttgcgatgctgaaagtcgtagagtgagaactc cgtaaagagcatcaagtgttgatggtgaataagaccactagtttcaagag aaacgacaaaggaaagaagggtagttcgaagaagagcggcaagcctgttg ccaatccgacgaagaaacccaaagctggtcctaagcctgaaacggagtgc tattattgcaagggtatgggtcactggaagcgcaactgccccaagtatct ggctgataagaaggcggccaaagaaaaatcaggtatatttgatatacatg ttattgatgtgtacttaaccagttctcgtagtagtgcctgggtattcgat accggttctgttgctcatatttgcaactcaaaacaggaactgcggaataa gcgaaggctggcgaaggatgaagtgacgatgcgcgtgggaaatggttcca aggttgatgcaatcgccgtcggcacaatttcacttcagttaccatcagga ttagttatgaacttaaataattgttatttagtgtctgcgttaagcatgaa cattatatggatactgtttattgcgagacggttactcgtttaagtcagag aataatggttgctctgtttctatgagtaatatcttttatggtcatgcacc cattgtgagaggatttttcatattgaatcttgatagtgataatacacata tacataacattgagaccaaaagagttagagttaacaatgatagcgccatg tttttatggcactgccgcttaggtcatattggtgtaaagcgcatgaagaa actccataccgatggacttttggagtcacttgacacgtgcgaaccatgcc tcatgggcaagatgactaaaactccgttctccggaacaatggagcgtgca agtgacttgttggaaatcatacataccgatgtgtgtgatccgatgagtgt ggaggcacgcagcggatatcattattttctcaccttcactgacgatttga gtagatatggttatgtctacttgatgaagcacaagtctgaaacatttgaa aagttcaagcaatttcagagtgaagttgaaaatcattataacaagaagat caagttcctacggtctgatcgtgggggtgaatatctgagtttcgagtttg gtgctcacttaagacaatgtggaattgtttcacagttgacaccgcctgga acaccacagtgtaatggtgtgtccgaacgtcgtaatcgtactttattaga gatggtgcgatctatgatgtatattaccgatttgccgttatcgttttggg gttatttattaaaaacagctgcattcactttaaatagggcaccatcaaaa tctgttgagatgacaccatacgaactgtggtatggcaatagaccaaagtt gtcgtttcttaaagtttggggatatgatgcttatgtcaaaaagcttcagc ctgaatatctggaacccaaagcggaaaagtgcgtcttcataggttacccg aaagagacagttgggtataccttccatctcaaatccgagggcaaagtgtt tgttgctaagaacgaagcttttctcgagaaggagtttctctcgagagaat tgagtgggaggaagatagaacttgatgcggttgtcgaacctctcatccct ctggatggtggcgcaaggcaaggagaaacccctgtcgttgtgatgccggg ataggaggaagttaatgatgatgatcatgaaactccggatcaagttcctg tcgaatctcgcaggtcgacgagaccgcgtactactcgagagtggtacggt aatcccgtcttatcaattatgttgttggacaacaatgaacctacgaatta tgaagaagcaatgatgggcccagattccaacaaatggctggaggccatga agtccgagataggatctatgtatgaaaacaaagtgtggactttggaagta ctacctgaaggctgcaaggctattcagaacaaatggatctttaagaagaa gacgggcgctgacagtaatgtgaccgtttataaagcttgacttgtggcaa agggtttttcacaagttcaagggattgactacgatgagacattctcaccc gtagcgatgcttaagtccgtccgaatcatgttagcaatagctgcattttt cgattatgaaatctggcagatggatgtcaaagcggcgttccttaacggtc tccttaaggaagagttgtatatgatgcaacccgaaggttttgtcgatcct aaaaatgctaacaaagcgtgcaagctccagggatccatttatggactggt gcaagcatctcgaagttggaataaacgctttggtgaggtgatcaaagcat ttgggtttatacaagtggttggagaatcttgtatttacaagaaggtgagt gggagctctgtggcgttcctaatactatatgtggatgacatattactgat tggaaacggcgtggagtttttggagaacataaaggattacttgaataaaa gtttctctatgaaggacctaggagaagctgcttacattctaggcattaag atctatagggatagatcataacgcgtgataggactttcacaaagcacgta ccttgataaagttttgaagaggttcaaaatggaacagtccaagaaggggc tcttgccagttttacaaggtacgagattgagtaagactcagtgcccagca actgataaagatatagagcatatgagcaccgtcccctatgcttcagccat aggttctatcatgtatgcaatgttgtgcattagaccggacgttagcctgg ccataagtatggcaggcaggttccagagtaatccaggagtggatcactgg atggcggtcaagaatatcctgaagtacctgaaaaggactacggagatgtt tctcgtatatggaggtgacaaagagctcgccgtaaagggttacgtcgatg caagctttgacacagatccggacgactctaagtcgcagaccggatatgta tttattcttaatgggggtgtggtaagctggtgcagttccaagcaaagcgt cgtagctgattctacatgtgaagcggagtacttggctgcctcggaggcaa ctaaggaaggtgtgtggatgaagcagttaatgacggatcttggagtggtg tcgagcgcactgaatccaataaccctgttttgtgacaacatgggtgtcat tgccttagcaaaggaaccgcagtttcacaagaataccatacgcatcaaac gacgcttcaacctcatccgcgactacgtcgaggaggaggacgtgaatata tgcaaagtgcacatggatctgaatgtagcacccgctgactaaacctcttc cacgggcaaagcatgatcaacaccagaagtgtatgggtgttagatttatt ataatgtaattcgcatggtgatgtgagggctagattattgactctagtgc aagtgggagactgtcggaattatgccctagaggcaatgataaataagtta ttattataattcctgtatcaagataatcgtttattatccatgctataatt gtgttgaatgaagacttagatacatgtgtggatacatagacaaaacactg tccctagtgtgacagcccgatgccgacgttccagaagattccccccttta tcccgtttttgtcgtgtgtctattttattttgtcgcatcatcatcgcatc attcgcatcatctgcattgcatcggcaccccgttgccgccagttttcaaa aacttgcatccgttggtagttgccggttctcgtcgttgcccattctgagt ccgaccacactcccacgcgtccgcggcatcgtcaaaccttgttttaaaag tgtgagtaaaactttccctgattgggttgagattttacgcgcggtcttta ttagatatagctaggctgcctgtcgaatttcgtcgcgatcggggttcgta tggtacccgaacggtcgaccgtagcggcaccgtattcggtctaccgtcgg acgtttgtcggtgttttaaaaattcgttgccgcaccgcccattctccctc tcgtccctggatatcccctctacatggcctcgtaaccgttcccgcgttca gaattagccgaatccgaccgcgcggttgaaaccggggcgggatttcgcta aacctagccccctcttctctatatatagcccctcctactagtattttgga cagcagcccccctgcctcattttgtgcgccacctaccccgaaaccctagc tcccgcagcctctctctcccaccagcgccgccggcccgccaggcccgatc cagcccgccttgggcccagattcgccgcccccgcgagctcccccagctcc agcaccatggcctcccgagctccctgcccacctcgcgtgcgcgccgcccc agctccccgtgtcgccccgcagtcgccgccggcagctcgccggagagccc cgccggacccaggccggagctccctatgctcctctctcttcttctctccc tcacccgtatctctctcttcccgcaggttccgaggtcgccgccaccgccc cgttctacgcctccgccgcgtggatccggtgtggagatgacagatccggc cggcctccgccgcccggtccgttttcggccgctccagtctcgctcgtgac ccgctgccatcgtcagggtcgttgcgaggagccatggcgctgcgtgctgt ccatcgggagatcgagcctccgccaccgcctcgccagctcgtgggccgcg caggagcagccaggctgccagatccggcccagctaggtagcccccccatc ggcctcctccaggcttcctccaccgccagcccaggccggtgtgcatcctc cgcccgaggcccagctccatttccccagatctggcccaggtgcacttggt gagcgcagctatttccccgcccccgttgcaacattactactttgcgctcg ttgcctcttaggcccagttaggaattcggcccattattttgttttatttt aggtttgcgatctattttttttgagggtttagaatatattcgatcgcccg tatctttttattcgtgtgtcggatcggaatgtgtagcatatggattttgt gtagaattccacgtagatttcgaatttctaacttgcataattatttgagg cagtttgatgtgcctaatgcatcgttttgcgtgctgtttcaataggatcc gttctgtagttatttctcgtgcgtgtccggattgcccgtataccgtagat taaatgtccatgttttagggaccatttttccatgtattttagagcggtca ttgtatttttgcgtgtagggaattgccgctaatttattttcccgcgtata ggttttttctcgcatttatgtgtggcattattttgtattgcaaccccaca tattttatatgtttccggggtagaaaaatccattggatttttctgtgcaa ttagttttagcttttgagtaagttagttcttgagatatttttccgtgttg ccctcttgtcattttcgtaggatttattccgtgcttcgtttgatcaagtt gtcaactggagagttgatcttgggtatttactctagcccctggtattttt ggttgcaatgtaaatgcatgtttaggtgtggtttgattgctctcaagttg ctagaaatagtgctgatttggaggagctgaaatatttctaagtctggaat ctgttattattttgttgttgtcttgtcttgtttctatcttttgttctgta gctcttttgaggttggtgcaatggagttagtggtaacccttgtgattctc tagcatgctgtgaattttcatgccatttggagacctgtatcttatgattt tctgctgtcaatatggcttcagatcgaaaactgcactttcatgaggtgta attttcactaagtttgaaatagtgtgtgagatgccattttgtgccttctt tccctagtgacggaaagtcgtgcccgcggttatgtggcaacgtggaagat ttgtttaacactggttctagataacttgaagttaacttaattaaaatatg ctaactatgtgtgtaaccgtgactgtctctttcatgagttatttctccga tcgaggacacggtggggttatgtctgacgtaggtaggtgtttcggatcat tcatttgatcatcagtagtcacgtccgctatgcgtagatcttcccactct tatttcttgtactcgtaagctagccaccaaatatatgcttagccgctgct gcaacctcaccacctaaccatgcctcacccattaagctttgctagtcttg atacctttggaaatgagattgctgagtcccctgtggctcacagattacta caacaccagttgcaggtacatgtaaaggttatttgacacgagcgcattga ttgttcatttggagttgcttcttcttcttcttcttcatcgatctaggatg ggttccaggccggcagcctgggatagcaaggatggacgtcgttcttcttt tgtcgtttgttttcgtccgtagtcggaccctgctcttactcttgatgttt atgtaatgtattgatgtgactctgatgtagcttgtggcgagtgtaagcca attcaatatatatatctcatcttttcagtacatgtacttgtaacgatatc cattcttgcgacacgacgagatgcgcttctatccctgacgaggccttcgt gccaaatcgaggatagggtcgcatcttgggcgtgacacctagcaagcctc tagttggctagcgagttggtcaaggatagtcagggtcttctggctatgta caaggtgttgttgcttgatgactggatcacatcatcgggagaatcatgtg atggactagacccaaactaatagacgtagcatgttgatcgtgtcattttg tagctactgttttctgcatgtcaagtatttattcctatgaccatgagatc atataactcactgacaccggaggaatgctttgtgtgtatcaaacgtcaca acgtaactgggtggctataaagatgctctacaggtatctccgaaggtgtc cgttgagttagtatggatcaagactgggatttttcactccgtgtgacgga gaggtatctcggggcccactcggtaatacaacatcacacacaagccttgc aagcaatgtgacttagggtaagccacgggatcttgtattacgggacaagt aaagagacttgccggtaaacgagattgaaataggtatgcggatactgacg atcgaatctcggggcaagtaacataccgaaggacaaagggaatgacatac gggattatatgaatccttggcactaaggttcaagcgataagatcttcgta gaatatgtaggatcaaatatgggtatctaggtcccgctattggatattga tcgaggagtccctcgggtcatgtctacatagttctcgaacccgcagggtc tacacacttaaggttcggcattgttgtatgcgtatttgagttatatggtt ggttaccgaatgttgttcggagtcccggatgagatcacagacgtcatgag ggtttccggaatggtccggaaacgaagattgatatataggatgacctcat ttgattaccggaaagttttcggcattaccgggaatgtaccgggagtgacg aatgggttccggatgttcaacggggggggggggggggacagcccaccccg gggaagcccataggccttaggggtgccacaccagcccttagtgggcttgt gggcaagcccaagaaggcccctgcgcaggataagagaaaatcaaagagaa aaggaaaaaaaggggaagtggggaaagagagaaggactccaccttccaat cctagttggactaggattggaggaggactcctccgcctccccccttcggg cgaaccccttggggctccttgagcctcaaggcaaggcccctcccctccct cctatatatactgaggtattagggatgatttgagacaacttttccacggc cgcccgaccacatgcctccacggtttttcctctagatcgcgttcctacgg agctcgggcagagcctgctgagattagctcaccaccaacctccggagcgc cgtcacgctgccggagaactcatctacctctccgtctctcttgctggatt aagaaggccgagatcatcgtcgtgctgtacgtgtgctgaacgcggaggtg tcgtccgttcggcactagatcggagcggatcttgggacggatcgcggaac ggttcgtgggacggttcgtggggcggatcaagggacgtgaggacgttcca ctacatcaaccgcgtttattaacgcttctgctgtgcgatctacaagggta cgtatatctgaaatccccctcatagatggacatcaccatgacaggtcttc gtgcgcgcgtaggaaattttttgtttcccatacgacgtttcccaacacga acaacctgagggatgttgagttgagtgggagttcttaagtaatatgatta attgaactcattatcctgaacaatagtctaagttgtctttgcaaattttg ttgtagatcaatggctcgcgcagcattttaatgcgttcctaagaaagcta agctaaaagaagatagaagcaattttgcgggccgggtctgtaatctgagg attagcctcacggcttcacaaaaggcttatgtccttgatgcaccgcttgg tttgccacctcctcgaacgtcgtttgtggatgtcgtgaacgtctgccaac cacgtgttgatgactacatgatagtttattgcacgacggtgactacatgt ctatggatgttctgtggatgttgatgactacagaatagttcaatgcacca cgtgtatcattgcatcataccataaattatcgttgaaggcttcttgtata ttcatcttccatcttgagaaattatttgtataatttaaagagtctcccaa aaaaccccgtggaaaaaaaatatgaggagaataatatagatatgttgctg aaactcctttaaactagtgaaaatggaaggaaatgatgcaacatataatg attattgtctcctcgataacccatataagaaaaaacctttcaagaaggag aaaaatcgttggtgagtttagggaacaatagatgtgctttgtatacattc ctttaaaaaaccttggaaaaaaagtattgcacatgtcgcctcattaaaaa ccttttatgagaaacttagagagaaagctcataaggaaaaagagtgtgat atatgtcattgaaaactcctttaaaaatgtatacaatgtaagaattattt aaaaatgttgttagcattcaa

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