Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Sequence Report: NM_100665

[Submit comment/correction]

Sequence	NM_100665
Subsequence	NM_100665_1.cds 214 3528
External Databases	Data at GenBank Data at EMBL Data at DDBJ
DB Remark	Locus Source: Arabidopsis thaliana (thale cress)
Species	Arabidopsis thaliana
Chromosome	1
Data Source	genbank Downloaded 2008-2009
Title	Arabidopsis thaliana ATRNL/RNL (ARABIDOPSIS THALIANA RNA LIGASE); 2',3'-cyclic-nucleotide 3'-phosphodiesterase/ RNA ligase (ATP)/ polynucleotide ki> (ATRNL/RNL) mRNA, complete cds.
Gene	ATRNL/RNL
Remark	DB_xref: taxon:3702 Feature: gene: locus_tag = 'AT1G07910'; synonym = 'ARABIDOPSIS THALIANA RNA LIGASE, ATRNL, RNL, T6D22.1, T6D22_1, TRNA LIGASE'; function = 'Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1, AtRNL consists of two domains an N-terminal ligase component and a C-terminal 5'-kinase/2',3'-cyclic phosphodiesterase (CPD) component that can function in tRNA splicing in vivo when expressed as separate polypeptides. Requires a 2'-PO4 end for tRNA splicing in vivo.'; db_xref = 'GeneID:837306'; db_xref = 'TAIR:AT1G07910' Feature: source: mol_type = 'mRNA'; ecotype = 'Columbia' Locus Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final; NCBI review. The reference sequence was derived from AT1G07910.1.; On Apr 18, 2007 this sequence version replaced gi:18390825.
EMBL Feature	feature_gene 1 3787 Location: 1..3787
DNA	gtgtgttttttacttttctgcaactaaatcgtgtttcttcctaagaaccc taaatctgaactgtctcatcttctccgatatcagtgagatcaataaatca tcttctcaccctagacgacagggaaactcggggattgattcggaaaaacg agttcgtttttctgcaagaaaaagagagatcacgctgagcagaagtggca agtaaaaccgaagatggatgctccatttgaatccggtgatagttcggcaa cagttgttgcagaagcagtaaacaaccaatttggcgggttaagtcttaag gaaagcaacactaatgcgccagtcttaccgagtcaaactacaagtaacca ccgtgttcaaaatctagtatggaaacctaagtcatatggaacagttagtg gatcatcttcggcaacagaagttggtaaaacatcggctgtctcacagata ggttcttctggagatacaaaagttggtctcaatctgagcaaaattttcgg aggtaatttgttggaaaaattttcggtggacaaatcgacttattgtcatg ctcagatcagagccactttctatccaaaatttgagaacgaaaagactgac caagagataagaacaagaatgattgagatggtatctaaaggattggcaac actggaggtatctcttaagcattcaggctctctctttatgtacgccggtc acaaggggggagcatatgcaaagaacagttttggtaatatttatactgcg gttggtgtttttgttctttcacggatgttcagggaggcttggggaactaa ggctccaaagaaagaagcagagttcaatgattttcttgagaaaaatcgca tgtgcatatctatggaactggtaaccgctgttcttggagatcatggtcaa cgcccactggatgattatgtggtagtgactgctgttaccgagttaggtaa tgggaagccccagttctattcaacttccgaaataatttcattttgccgga aatggcgtctacccacaaatcatgtttggctgttttccacaaggaaatca gtgacctcttttttcgcggcgtttgatgcactgtgtgaagaagggatagc aacctcggtctgtagagctcttgatgaagtagctgatatatcagtcccag cctcaaaggaccatgttaaggtgcagggtgagatattagagggtcttgtt gctcgtatcgtgagcagtcagagctcaagagatatggaaaatgtcttgag agatcatcctccaccaccctgtgatggagctaatcttgatctgggactca gtctaagagagatatgtgctgcccatagatctaacgagaaacagcaaatg agagcacttttaaggagtgttgggccaagcttttgccccagtgacgtgga atggttcggagatgaatctcatccgaaaagtgctgacaaatctgttataa caaaattcctgcaatctcagcctgcagattattcaactagtaaattacag gaaatggtacgcttgatgaaggaaaaacgtcttccagccgcattcaagtg ttaccataattttcatagagctgaggacatatcacctgataacctttttt ataaattggttgtccatgtgcacagcgattcaggatttaggcgttaccac aaagagatgaggcacatgcctagtttgtggcctttatatcgaggtttctt tgttgatattaatttgttcaagtcaaacaaagggagggatctgatggctc tgaaaagcattgataatgccagtgaaaatgatggtcgaggagaaaaggat ggtttggctgatgatgatgctaacttaatgattaaaatgaagtttctcac atacaagttgagaacctttttgatccgtaatggcctatcaattctattta aagacggggcagcagcttacaaaacttactaccttaggcaaatgaaaatc tggggtacgtcagatggaaagcagaaagaactttgcaagatgcttgatga atgggctgcttacataagaagaaagtgtgggaatgatcagctatcttcat caacatacttaagtgaagctgagccattcctggagcagtacgcgaaacgg agcccaaagaaccatattttgatagggtctgctgggaacctagttagaac tgaggacttcttggccattgttgacggtgatctagatgaagaaggcgatc ttgtgaagaaacaaggagtgacaccagctactcctgagccagctgtgaag gaagctgtccaaaaggatgaggggttaattgtattctttccaggaattcc tggatctgctaaatctgcactttgcaaggagttattgaacgccccaggag gctttggagatgataggccagtgcatactctgatgggtgatcttgtcaaa ggaaaatattggccaaaggttgctgatgaacgtcgtaaaaaaccacaatc gattatgttggctgacaaaaatgccccaaatgaagatgtctggagacaga ttgaagatatgtgtcggagaactagggcttctgcagttccaatcgttgct gattctgaaggaaccgatacaaatccatattcacttgatgccttggctgt attcatgttccgtgtacttcaacgagttaaccatccgggaaagctcgaca aggaatcttcaaatgcaggttatgtgctattgatgttttatcacctttat gagggaaagaaccgtaatgaatttgagagtgaattgattgagcgctttgg ctccctcatcaagatgccactattgaaatcagacaggactcctttacctg atcctgttaaatcagttcttgaggagggcattgatttgttcaatctccat agtagaagacatgggagactcgagtcaacaaaaggaacatatgcagcgga atggaccaaatgggagaaacaactacgagatactctagttgcaaattctg agtatctcagttctattcaggttccatttgagtctatggttcatcaagtg cgagaagagctaaaaacaatagcgaagggtgattacaagccaccaagttc ggagaaaagaaaacacgggtctattgttttcgctgccatcaacttgcctg ctactcaagttcacagtcttcttgaaaagttggctgcagcaaacccaaca atgagatcttttctagagggaaagaaaaagagcatacaggaaaaacttga acggtctcacgtgacgctcgcccacaagagaagccatggcgtagcaactg tagccagctatagtcagcacttgaacagagaggtacccgtagagctcacc gagctcatctacaacgacaagatggctgctctaacagcccatgttggatc tgtggacggagagaccgtagtctccaagaacgaatggccacatgttacat tgtggacagcggaaggcgttactgcgaaagaggccaacacgttacctcag ctttacttagaaggaaaggcgagccgcttggtgatagatcctccggtgtc aatctcaggtcctctggagtttttctgaatacttgattaaacatggaagt ttctctcttgagggaggttgctcgtggaatgggacacatatggttgttat aataaaccatttccattgtcatgagattttgaggttaatatatactttac ttgttcattattttatttggtgtttgaataaatgatataaatggctcttg ataatctgcattcattgagatatcaaatatttactctagagaagagtgtc atatagattgatggtccacaatcaatgaaatttttgg

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.