GrainGenes Sequence Report: CV771876
Sequence
CV771876
External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC300711
NCBI UniGene
Ta.58434
DB Remark
Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001105920.1 Helminthosporium carbonum susceptibility1 [Zea mays]'
Keyword
EST
Species
Triticum aestivum
Clone Library
Triticum aestivum FGAS: Library 2 Gate 3
Data Source
genbank Release 145, Dec 15 2004 genbank Updated Nov 2006
Title
FGAS066269 Triticum aestivum FGAS: Library 2 Gate 3 Triticum aestivum cDNA, mRNA sequence.
Probe
MAG1587
Remark
DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Feature: source: mol_type = 'mRNA' Locus Comment: Contact: Wm L Crosby; Bioinformatics; University of Saskatchewan, Department of Computer Science; 1C101 Engineering Building, 57 Campus Drive, Saskatoon,; Saskatchewan, S7N 5A9, Canada; Tel: 306 966 1769; Fax: 306 966 2033; Email: fgas_ests@cs.usask.ca; This sequence is the direct result of the Base calling software; Phred (default parameters). It is the raw base calls. To aid in the; identification of the high quality insert the software Lucy; (default parameters) has been run on this sequence. Lucy identified; the region [98,642].; Plate: WEF072 row: J column: 02. Note: Organ: Crown and leaf; Vector: pCMV.SPORT6; Aerial parts (crown and leaf) of wheat cultivar Norstar from control and long exposure times to low temperature. 4 mRNA populations were combined before constructing the library; 7 days non-acclimated plants and 1, 23, and 53 days cold-acclimated at 4C. Non-acclimated and cold-acclimated plants were grown in vermiculite This is the only library that was done according to the Invitrogen manual, and therefore, a percentage of clones will not have the 3 prime end because of NotI digestion within the cDNA.
DNA
aagctatgacattaggcctatttaggtgacactctagaacaagtttgtac
aaaaaagcaggctggtaccggtccggaattcccgggatatcgtcgaccca
cgcgtccggcgcgggcagtggcgggcgcggcgtccgggtgtgcgtcaccg
gcggcgccgggttcatcggctcctggctcgtcaggaagctgctccaggca
ggctacaccgtccacgccaccctgcggagcatcggggacgaggggaaagc
ggggctgctgcggcggctcgtccccggcggcgggccgccggagcagctgg
tgctgttcgaggccgacctcttcgacgccgccagcttcgcgccggccatc
gccggctgccagttcgtcttcctcgtcgccaacccctccgcgcacgaggc
cgccgactccaagtacaagacttcggcggaagccgcggcggatggggtgt
gcgtcatcctccggctatgcgcgcaatctaagacagtgaagcgcgtcatc
cacaccgcatcggtgacggctgcttcgccgctgacaaagtcctccagcgc
cgcgaccgcggtgtacagcgatttcatctctgaatcttgttggactctgc
tggatgtcgattaccctctccggagcgtgcatttcgataagtacatagag
tccaaggtccctgtcagagaaagagctcctcagctacaacgacggcgaga
gcccggcgttcgaggtggtcaccctgtcgctgggcctcgtcgggggcgac
acggtgctcaaccacctccagaaaacggggagagcatggtgccccggtta
accaacaagatcccttactcttgctgccaaggaacctgcaaaggctgctg
ggctccg
GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: CV771876
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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture. | |||