GrainGenes Sequence Report: CV761692
Sequence
CV761692
External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC312357
NCBI UniGene
Ta.31536
DB Remark
Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, strongly similar to NP_001067154.1 Os12g0586000 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Triticum aestivum
Clone Library
Triticum aestivum FGAS: Library 2 Gate 3
Data Source
genbank Release 145, Dec 15 2004 genbank Updated Nov 2006
Title
FGAS056080 Triticum aestivum FGAS: Library 2 Gate 3 Triticum aestivum cDNA, mRNA sequence.
Probe
MAG276 MAG277
Remark
DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Feature: source: mol_type = 'mRNA' Locus Comment: Contact: Wm L Crosby; Bioinformatics; University of Saskatchewan, Department of Computer Science; 1C101 Engineering Building, 57 Campus Drive, Saskatoon,; Saskatchewan, S7N 5A9, Canada; Tel: 306 966 1769; Fax: 306 966 2033; Email: fgas_ests@cs.usask.ca; This sequence is the direct result of the Base calling software; Phred (default parameters). It is the raw base calls. To aid in the; identification of the high quality insert the software Lucy; (default parameters) has been run on this sequence. Lucy identified; the region [92,731].; Plate: WEF027 row: N column: 22. Note: Organ: Crown and leaf; Vector: pCMV.SPORT6; Aerial parts (crown and leaf) of wheat cultivar Norstar from control and long exposure times to low temperature. 4 mRNA populations were combined before constructing the library; 7 days non-acclimated plants and 1, 23, and 53 days cold-acclimated at 4C. Non-acclimated and cold-acclimated plants were grown in vermiculite This is the only library that was done according to the Invitrogen manual, and therefore, a percentage of clones will not have the 3 prime end because of NotI digestion within the cDNA.
DNA
aaacactaggcctatttaggtgacactatcgaacaagtttgtacaaaaaa
gcaggctggtaccggtccggaattcccgggatatcgtcgacccacgcgtc
cgcgaccattgcgtagatctgaaggagctgccacctagtgtatgtgaaat
cagctctctggaaagcatctccttgtcaaactgccatgacctcacagagc
tgccatatgagctgggcaagctgcactgcctgagcatcttgcgggtgtac
gcctgcccggcactgtggaagcttccaccgtcggtatgcagcctgaagag
gctgaaatacctggacatatcgcagtgcattaaccttacagaccttccag
aagagcttggccacctgacaaacctagagaagatcgacatgcgggaatgc
tcgcggttgaggagcctccctaggtcctcctcgtcgttgaagtccctcgg
gcacgtcgtgtgcgacgaggaaacggcgatgctgtggagggaagccgagc
aggtcatcccggacctccgtgtgcaggtagcagaagagtgttacaacctg
gactggcttgtagactgatgttctggatgctctctgcctccaggctcacc
atgtacaaatgatgtgtatatgtttccctgcttaatgcaggatgggtagt
caatacactgttcagttttgacatgttcagtgttcatgtagttgactcca
gtagctgacatatcttgaagtcatggtcttaagtagaaatgcacacaaga
gttatattggcaaaaaaaaaaaaagggcggccgctctagagatccctcga
ggggcccaagcttacgcgtacccagctttcttgtacaaagtggtccttat
agtgagtcgtat
GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: CV761692
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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture. | |||