GrainGenes Sequence Report: CN011335
Sequence
CN011335
External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC304805
DB Remark
Locus Source: Triticum aestivum (bread wheat)
Keyword
EST
Species
Triticum aestivum
Cultivar
Sumai3
Clone Library
Wheat Fusarium graminearum infected spike cDNA library
Tissue
Spike
Developmental Stage
Adult plant
Data Source
genbank Release 141, Apr 15 2004 genbank Updated Nov 2006
Title
WHE3882_H08_P16ZS Wheat Fusarium graminearum infected spike cDNA library Triticum aestivum cDNA clone WHE3882_H08_P16, mRNA sequence.
Strain
lab_host E. coli SOLR
Clone
WHE3882_H08_P16
Probe
MAG4287
Remark
DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Feature: source: mol_type = 'mRNA' Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequences have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20. No effort was taken; to identify ESTs of fungal origin from this library, thus this EST; could be of wheat or fungal origin.; Seq primer: SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes were sprayed at anthesis with Fusarium graminearum. Total RNA, and poly(A) RNA were prepared and pooled from infected spike at 0, 6, 12, 24, 36 and 48 hours after inoculation, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in G. Muehlbauer lab at the University of Minnesota (Kruger, W.M., Muehlbauer, G.J., Pritsch, C., Vance, C.). The cDNA library should contain genes of both wheat and fungal pathogen origin. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA
gaggctcatagctgattttattgagaaatttgagcttattacaaatcact
tgagttcatattcagattcaattcacccctactatttccttactcgtttt
gtggagggactgaggccggacatacgcgcggtggtcatagtgcatcggcc
atcggacctggacacagcttgtgctctggctctgctccaggaggaggtgg
ctgatggagcaggcgtggagtcgtcgcggcagttccactaccagtcacgg
cctccaaaggtgaacacgcgccctcccgcggcgctgccacttccaccacc
atcgggtcgcccaccaccaccagctggggcggccgatcggcgtgggactg
aagccgctcgagctgaagcagcgaaaatcaagactctgcgcgactacaga
acagcgtgggggctatgcttcaagtgtggcgaacgatggggtcatgacca
cacctgccccacgtcagtccagctccatgtggtcgaggaactcctggagc
tgttcggcatcgacgcagtcacggatcagcagagcttgccagcggacgag
caacagcaagatatagtcatggcgatctcatgatctgccgtgancgggag
gggtggcatctaaagctttttagctccgtgcttggattcaggccgcgaag
tgttgatgctcgtcgactccggaagcacaacttcttcttcctcctcgccc
gaaccccagttactctcgatcttgtgtaatcgctacttga
GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: CN011335
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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture. | |||