GrainGenes Sequence Report: CN008937
Sequence
CN008937
External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC347753
NCBI UniGene
Ta.37153
DB Remark
Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001059893.1 Os07g0540800 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Triticum aestivum
Cultivar
Sumai3
Clone Library
Wheat Fusarium graminearum infected spike cDNA library
Tissue
Spike
Developmental Stage
Adult plant
Data Source
genbank Release 141, Apr 15 2004 genbank Updated Nov 2006
Title
WHE2646_H06_O12ZE Wheat Fusarium graminearum infected spike cDNA library Triticum aestivum cDNA clone WHE2646_H06_O12, mRNA sequence.
Strain
lab_host E. coli SOLR
Clone
WHE2646_H06_O12
Probe
MAG984
Remark
DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Feature: source: mol_type = 'mRNA' Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequences have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20. No effort was taken; to identify ESTs of fungal origin from this library, thus this EST; could be of wheat or fungal origin.; Seq primer: T3 primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes were sprayed at anthesis with Fusarium graminearum. Total RNA, and poly(A) RNA were prepared and pooled from infected spike at 0, 6, 12, 24, 36 and 48 hours after inoculation, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in G. Muehlbauer lab at the University of Minnesota (Kruger, W.M., Muehlbauer, G.J., Pritsch, C., Vance, C.). The cDNA library should contain genes of both wheat and fungal pathogen origin. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA
agggtcgagccaccaccgcatcttccaccgttcgtcggctcgcccaagcg
gccaaacaccatggctccgcaccaccgctgccgcatcccctcctacctcg
ccaccgccgctgccctcctccttgccttcctcctcccgccgctggccgct
tcccagtggcagaactgcggcaagaacggcaacttcaaccagaacagcac
ctaccaggctaacatccaggccctctccgttacccttcccaagaacgcct
cctcctcgcggacgctattcgcggccgacagcgtgggcaccgttccggac
atcgtctacgcactcgcgctctgccgcggcgacgccaacgcctctgcctg
cggcgcttgcgtctccaacggcttcaaggacgcgcagcagctctgcccct
acagtaaagtcgctgccgtct
GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: CN008937
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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture. | |||