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GrainGenes Sequence Report: CD490873

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Sequence	CD490873
Contig	Ta.6130.1.S1_at Ta.6130.2.S1_a_at Ta.6130.3.S1_a_at NSFT03P2_Contig5989
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC287386
wEST map position	CD490873
NCBI UniGene	Ta.6130
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, strongly similar to NP_001060070.1 Os07g0573800 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	6BL
Clone Library	Wheat etiolated seedling shoot normalized cDNA library
Tissue	Etiolated shoot
Developmental Stage	Five day old seedling
Data Source	genbank Release 136, Jun 15 2003 genbank Updated Nov 2006
Title	WHE3007_C12_F23ZT Wheat etiolated seedling shoot normalized cDNA library Triticum aestivum cDNA clone WHE3007_C12_F23, mRNA sequence.
Strain	lab_host E. coli DH10B
Clone	WHE3007_C12_F23
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; This EST was generated by sequencing from the 3' end of the clone.; Sequences have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20.; Seq primer: T7 primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Roots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. The cDNA clones were in vivo excised to give pBluescript phagemids before normalization was carried out. The mass excision of phagemid library and normalization were done in HT Nguyen lab by D. Zhang at Texas Tech Univeristy. The normalization protocol used was modified from that of Soares'. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA	tttttttttttttttttttttttttgcagggcaatacgtgtctcattcat attataaagatcaaagtacaagtgacgtaaagaccgacatgacaacaact tcagtcgtgtatgagtgcaaaacagttcagtgcaatatacaagtcgcttt gcatttctttaagtttgactggaagtagttcacacaagttcgctgtcaca atggtgttgaatgatgtatgaaaccatggaattttctgtggatcatccat cttcgctgacgctgagactggagagcaacttgaaagctcttatcggctag ggctttcttttttacatggacgccaccactgcgttccagaacaaagaggt cattcagcatgtcaggatgaggcctttgcagcctgtagcatttccacaat aagtgtcttaacatcctttctgtcttgcgcacgtctagggaagggaattc gcagcttcagaacagttccatcataaccagccttcacattgataccgagg ctatccacatccagaatagaagcgaaatccaccttaacagaggttgagtg ttgcacgatgagctttgtatcatcagcatgatccttgttcatgtggcctg caataggagtggagaactgagatataggatccacttttgcttccttgaac tcagctgcactaaactctccagagccaaggatagctgttgcaaccccaga tacgtaacgtacagcttttggtttgatgtgcagaaaacggaagtcaccaa agtca

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