GrainGenes Sequence Report: CD452993
Sequence
CD452993
Contig
Ta.25493.1.A1_at NSFT03P2_Contig12858
External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC289321
wEST map position
CD452993
NCBI UniGene
Ta.25493
DB Remark
Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001055416.1 Os05g0384800 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
1AL 1BL 1DL
Clone Library
CS wheat etiolated seedling root normalized cDNA library
Tissue
Root
Developmental Stage
Five day old etiolated seedling
Data Source
genbank Release 136, Jun 15 2003 genbank Updated Nov 2006
Title
WHE1147_D05_H09ZT CS wheat etiolated seedling root normalized cDNA library Triticum aestivum cDNA clone WHE1147_D05_H09, mRNA sequence.
Strain
lab_host E. coli DH10B
Clone
WHE1147_D05_H09
Probe
WHE1147_D05_H09
Remark
DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; This EST was generated by sequencing from the 3' end of the clone.; Sequences have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20.; Seq primer: T7 primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Roots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. The cDNA clones were in vivo excised to give pBluescript phagemids before normalization was carried out. The mass excision of phagemid library and normalization were done in HT Nguyen lab by D. Zhang at Texas Tech Univeristy. Normalization protocol used was that of Soares'. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA
ttttttttttttttttttttgaaaataaagcttaactcttgcatggctaa
ttcgcatctcaatctacaattagcatccgaaatgttctgcacccgttatc
tctggctcagctgttggacctatatattcgtggatcaatggaaaattagg
aagaacaaactctaaattggtgtgcttgcttatgcatttacagggcagat
tagccggctgccacgaaccatttacatcacttctccttgagcaatctatt
ttccacacaagaaaaaggaggaagagggtgtaaaagaaaatgcaagccca
cattttccaaacagcagccctctttctttcaggccctaattaacctcgca
accaaacacatgctctatgtcagtgaggtacatcactatcaatactggcg
accgatttgtccaccacacgaacgttatacagctcgtatacccttgcccg
gttctcttgccaccattgctctgcttgcgtctcgctgaaacgcttccggc
tgaaccgtaccctcctaaaatctctagcccctccaggtagggcagtaagg
gtgatgtanacccctggttcatcttgctctacccattcagactcaggctt
agagtctgaatcgggctgtttggttccattcttgccaacttccaggtgag
tcttatttctaactgaacttggtccattagaaacaatcaaccattagacc
cgttcaaatatggctctcctgaatttcttgggct
GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: CD452993
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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture. | |||