GrainGenes Sequence Report: CD056250

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Sequence

CD056250

External Databases

TIGR Gene Index

NCBI UniGene

DB Remark

Locus Source: Hordeum vulgare

UniGene title 'Syntaxin (Ror2)'

Keyword

EST

Species

Hordeum vulgare

Cultivar

Ingrid BC mlo-5

Clone Library

Tissue

leaf epidermis, 6 h and 24 h post inoculation with Blumeria graminis

Developmental Stage

7 d after germination

Data Source

genbank	Release 136, Jun 15 2003
genbank	Updated Nov 2006

Title

HO11K18S HO Hordeum vulgare cDNA clone HO11K18 5-PRIME, mRNA sequence.

Strain

lab_host XL10-Gold

Clone

HO11K18

Probe

bast41F0311

Remark

DB_xref: taxon:4513

Feature: source: mol_type = 'mRNA';

Locus Comment: Contact: Patrick Schweizer; Transcriptome Analysis, Cytogenetics Department; Institute of Plant Genetics and Crop Plant Research (IPK); Corrensstr. 3, D-06466 Gatersleben, Germany; Tel: 0049 (0)39482-5660; Fax: 0049 (0)39482-5595; Email: schweiz@ipk-gatersleben.de; Insert Length: 518 Std Error: 0.00; Plate: 11 row: K column: 18; Seq primer: SK.

Note: Vector: pBluescript SK+; Site_1: EcoRI (5'-end of cDNA); Site_2: XhoI (3'-end of cDNA); Approximately 5 % of the clones correspond to cDNA from the fungi B. graminis hordei and tritici, respectively. Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRIadapter used for cloning. To excise the insert, restriction sites upstream EcoRI should be used (e.g. BamHI, SalI,PstI). NOTE: Also due to the cloning system used Blue/white selection for recombinats is not 100% reliable. Average insert size is 1.2 kb

DNA

cggcacgagggtggcggcgcagggggagcagctggacgacatcgagggcc
acgtcgggcgggcgaggtcgttcgtcgaccgcgggcgcgagcagctgcag
gtggcacgcaagcaccagaagagctcccgcaagtggaccttcatcggcat
cggcatcctgctcgtcgtcatcctcatcatcgtcatccccatcgtgctca
agaacaccaacaagagcaacaacaacaacagccagcagtagtggtaggaa
cagcctgtggatctgttgtctgtctctgatgatcctggtcctggattgct
tcctggttgttgttgttgattgtcttttgtggaattttttgcgattgtaa
ttactccatccatgtggttcgttgagccactcgattattatttcatgact
atatacttttcggtgattttctttactgtagtagtagtactccctctgta
aaaataatactagaaatgtttagatcagttacgtactgtagtgatctaaa
aagttcttatatttcttt


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