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GrainGenes QTL Report: QGpc.StMo-2H.3

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QTL	QGpc.StMo-2H.3
Trait Affected	Protein content
Ontology	TO:0000598 Planteome protein content TO:0000490 Planteome protein composition related trait TO:0000598 Planteome protein content
Gene Class	Grain protein content
Trait Study	Protein content, Abdel-Haleem05
Map	Hordeum-OWB-OPA2008-2H Hordeum-SxM-FeedQTL-2H
Map Data	Barley, SxM, Feed QTLs Barley, OWB, OPA2008
Chromosome	2H
Nearest Marker	MWG557
Positive Significant Marker	Pcr1 ABA5 11_11023 12_30378
LOD Peak Height	11.8
LOD Threshold	3.2
Phenotypic R2	18.8
Effect of Allele Substitution	-0.457
Higher Scoring Allele from	Steptoe (barley)
Species	Hordeum vulgare
Parent	Morex (barley) Steptoe (barley)
Comment	Other name = QGpc.msu-2H.2 Other name = Qpro2b Pcr1, a significant marker for QGpc.StMo-2H.3, colocalizes with POPA2_0994 on the HarvEST integrated map. POPA2_0994 is 2.5 cM north of POPA2_0943 on Hordeum-OPA123-2008-2H Trait at Barleyworld = Grain Protein QTL analysis method = QTL-STAT, an interval mapping program using linear models to estimate QTL parameters (B.H. Liu and S.J.Knapp, unpub.). QTL assessed with single and multilocua ANOVAs
Environment	Bozeman 1992 Bozeman 2000
Reference	Mohammadi M et al. (2015) A genome-wide association study of malting quality across eight US barley breeding programs 128:705-721. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Blake TK (2006) in preparation. Hayes P et al. (1993) Quantitative trait locus effects and environmental interaction in a sample of North American barley germ plasm Theoretical and Applied Genetics 87:392-401.

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