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GrainGenes Probe Report: BE405509-3B

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Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.


Probe
BE405509-3B
Data at Wheat_SNP
BE405509-3B
Reference
ReferenceAkhunov ED et al. (2010) Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes. BMC Genomics 11:702.
General Remarks
SNP INS;C>T;T>A at 51, 1;55;56
SNP C>T at 267
SNP A>C at 323
Reference sequence TTGGAGCAGCCATGAATAACGAGGCTCTAAAGAGCTTGAACATCACCCACATCTTGGTTGTAGCCAGATCACTGAATCCCGCCTTTCCAGCAGAATTTACGTACAAGAAGATCGAGGGTACTGTTCTCCTAATTTTTACCTGTGTTTCCAGCTAAGATATTGGCCTATGACCTTTATAATCCCAAGATCCTGACATTCCTGATATGTTTGATAGACATGTTAGCCAACTTTTCACCATCTTCGTTATATTTAAAATTGATGTGTATCAATTCTGGTTTAGAGCATTCATATTCTGATAACAAAATTTAGATTGGAACATCTAAATCTCTACTCTGTGTTAGTGGTTTTGTAGCC
Reference sequence ACATCTTGGTTGTAGCCAGATCACTGAATCCCGCCTTTCCGCAGAATTTACCTACTAGAAGATCGAGGGTACCGCTCTCCTAATTTTTACCTGTGTTTCCAGCTAAGATATTGGCCTATGACCTTTATAATCCCAAGATCCTGACATTCCTGATATGTTTGATAGACATGTTAGCCAACTTTTTACCATCTTCGTTATATTTAAAATTAATGTGTATCAATTCTGGTTTAGAGCATTCATATTCTGATAACAAAATTTAGATTGGAACATCTAAATCTTTACTCTGTGTTAGTGGTTTTGTAGCCTTTACTTCTTTTTGACATGTTTCTTAGCCTTTACTGATTGTGTCTACCTTAGCAATTTTCTTTTGTTATCCAAGGTTCCGTGCAGAACTAAAAACATACTTTCTTTATTGACACAGTACTTGACAGC
Type
EST
SNP
PCR primers
BE405509B_R1 GCTCTAAACCAGAATTGATACACATTA
BE405509B_R1 GGCTACAAAACCACTAACACAGAG
BE405509_cpF1 TGGAGCAGCACTGAATAACGBE489244-3D
PCR_primers
Sequence
NSFT03P2_Contig11516
Linkage Group
3B
Source Species
Triticum aestivum