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GrainGenes Probe Report: HORVU.MOREX.r2.6HG0486820

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.6HG0486820
Locus	HORVU.MOREX.r2.6HG0486820.1
URL	Gene Ontology GO:0009234 Gene Ontology GO:0030976 Gene Ontology GO:0070204
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Vacuolar ATPase assembly integral membrane protein VMA21 homolog GO:0009234; biological_process; menaquinone biosynthetic process GO:0030976; molecular_function; thiamine pyrophosphate binding GO:0070204; molecular_function; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity
Type	Genomic
Sequence	HORVU.MOREX.r2.6HG0486820.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)