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GrainGenes Probe Report: TraesCS6A01G207500

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	TraesCS6A01G207500
Locus	TraesCS6A01G207500.1
URL	Pfam PF02776 [ Show all 23 ]
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.
General Remarks	BLAST Hit Accession: tr|A0A151SJF5|A0A151SJF5_CAJCA Human Readable Description: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase Pfam IDs Description: PF02776: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; PF16582: Middle domain of thiamine pyrophosphate; PF02775: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; PF13378: Enolase C-terminal domain-like; PF12697: Alpha/beta hydrolase family InterPro IDs Description: IPR000073: Alpha/beta hydrolase fold-1; IPR004433: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase; IPR011766: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; IPR012001: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; IPR013342: Mandelate racemase/muconate lactonizing enzyme, C-terminal; IPR018110: Mandelate racemase/muconate lactonizing enzyme, conserved site; IPR029017: Enolase N-terminal domain-like; IPR029035: DHS-like NAD/FAD-binding domain; IPR029058: Alpha/Beta hydrolase fold; IPR029061: Thiamin diphosphate-binding fold; IPR029065: Enolase C-terminal domain-like; IPR032264: Menaquinone biosynthesis protein MenD, middle domain GO IDs Description via InterPro: GO:0003824 MF: catalytic activity; GO:0009063 BP: cellular amino acid catabolic process; GO:0009234 BP: menaquinone biosynthetic process; GO:0030976 MF: thiamine pyrophosphate binding; GO:0070204 MF: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity
Type	Genomic
Sequence	TraesCS6A01G207500.1
Source Species	Triticum aestivum
Source Germplasm	Chinese Spring