GrainGenes Probe Report: TraesCS5B01G193600
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Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.
Probe
TraesCS5B01G193600
Locus
TraesCS5B01G193600.1
URL
Pfam PF08082
[ Show all 24 ]
Reference
IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.
General Remarks
BLAST Hit Accession: tr|M7ZX76|M7ZX76_TRIUA Human Readable Description: Pre-mRNA-processing-splicing factor 8 Pfam IDs Description: PF08082: PRO8NT (NUC069), PrP8 N-terminal domain; PF08083: PROCN (NUC071) domain; PF10598: RNA recognition motif of the spliceosomal PrP8; PF10597: U5-snRNA binding site 2 of PrP8; PF10596: U6-snRNA interacting domain of PrP8; PF12134: PRP8 domain IV core; PF01398: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; PF08084: PROCT (NUC072) domain InterPro IDs Description: IPR000555: JAB1/MPN/MOV34 metalloenzyme domain; IPR012337: Ribonuclease H-like domain; IPR012591: PRO8NT domain; IPR012592: PROCN domain; IPR012984: PROCT domain; IPR019580: Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding; IPR019581: Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding; IPR019582: RNA recognition motif, spliceosomal PrP8; IPR021983: PRP8 domain IV core GO IDs Description via InterPro: GO:0000398 BP: mRNA splicing, via spliceosome; GO:0003676 MF: nucleic acid binding; GO:0003723 MF: RNA binding; GO:0005515 MF: protein binding; GO:0017070 MF: U6 snRNA binding; GO:0030623 MF: U5 snRNA binding
Type
Genomic
Sequence
TraesCS5B01G193600.1
Source Species
Triticum aestivum
Source Germplasm
Chinese Spring
GrainGenes Probe Report: TraesCS5B01G193600
[Submit comment/correction][What is a probe?]
Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.
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