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GrainGenes Probe Report: TraesCS4D01G081200

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	TraesCS4D01G081200
Locus	TraesCS4D01G081200.1
URL	Pfam PF00730 [ Show all 19 ]
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.
General Remarks	BLAST Hit Accession: tr|W5ERX7|W5ERX7_WHEAT Human Readable Description: Endonuclease III homolog Pfam IDs Description: PF00730: HhH-GPD superfamily base excision DNA repair protein; PF00633: Helix-hairpin-helix motif InterPro IDs Description: IPR000445: Helix-hairpin-helix motif; IPR003265: HhH-GPD domain; IPR003651: Endonuclease III-like, iron-sulphur cluster loop motif; IPR004035: Endonuclease III, iron-sulphur binding site; IPR011257: DNA glycosylase; IPR023170: Helix-turn-helix, base-excision DNA repair, C-terminal; IPR030841: Endonuclease III-like protein 1 GO IDs Description via InterPro: GO:0003677 MF: DNA binding; GO:0003824 MF: catalytic activity; GO:0003906 MF: DNA-(apurinic or apyrimidinic site) lyase activity; GO:0005634 CC: nucleus; GO:0006281 BP: DNA repair; GO:0006284 BP: base-excision repair; GO:0006285 BP: base-excision repair, AP site formation; GO:0019104 MF: DNA N-glycosylase activity; GO:0051539 MF: 4 iron, 4 sulfur cluster binding
Type	Genomic
Sequence	TraesCS4D01G081200.1
Source Species	Triticum aestivum
Source Germplasm	Chinese Spring