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GrainGenes Probe Report: TraesCS4A01G122500

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	TraesCS4A01G122500
Locus	TraesCS4A01G122500.2
URL	Pfam PF08446 [ Show all 30 ]
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.
General Remarks	BLAST Hit Accession: tr|A0A0A8IC32|A0A0A8IC32_HORBU Human Readable Description: Phytochrome Pfam IDs Description: PF08446: PAS fold; PF01590: GAF domain; PF00360: Phytochrome region; PF00989: PAS fold; PF00512: His Kinase A (phospho-acceptor) domain; PF02518: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase InterPro IDs Description: IPR000014: PAS domain; IPR001294: Phytochrome; IPR003018: GAF domain; IPR003594: Histidine kinase-like ATPase, C-terminal domain; IPR003661: Signal transduction histidine kinase, dimerisation/phosphoacceptor domain; IPR005467: Histidine kinase domain; IPR012129: Phytochrome A/B/C/D/E; IPR013515: Phytochrome, central region; IPR013516: Phytochrome chromophore binding site; IPR013654: PAS fold-2; IPR013767: PAS fold; IPR016132: Phytochrome chromophore attachment domain; IPR029016: GAF domain-like GO IDs Description via InterPro: GO:0000155 MF: phosphorelay sensor kinase activity; GO:0005515 MF: protein binding; GO:0006355 BP: regulation of transcription, DNA-templated; GO:0007165 BP: signal transduction; GO:0009584 BP: detection of visible light; GO:0009585 BP: red, far-red light phototransduction; GO:0009881 MF: photoreceptor activity; GO:0017006 BP: protein-tetrapyrrole linkage; GO:0018298 BP: protein-chromophore linkage; GO:0042803 MF: protein homodimerization activity
Type	Genomic
Sequence	TraesCS4A01G122500.1 TraesCS4A01G122500.2 TraesCS4A01G122500.3
Source Species	Triticum aestivum
Source Germplasm	Chinese Spring