Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: TraesCS3A01G264800

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	TraesCS3A01G264800
Locus	TraesCS3A01G264800.1
URL	Pfam PF07522 [ Show all 21 ]
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.
General Remarks	BLAST Hit Accession: tr|A0A1D5V7R5|A0A1D5V7R5_WHEAT Human Readable Description: DNA ligase Pfam IDs Description: PF07522: DNA repair metallo-beta-lactamase; PF04675: DNA ligase N terminus; PF01068: ATP dependent DNA ligase domain; PF04679: ATP dependent DNA ligase C terminal region InterPro IDs Description: IPR000977: DNA ligase, ATP-dependent; IPR001279: Metallo-beta-lactamase; IPR011084: DNA repair metallo-beta-lactamase; IPR012308: DNA ligase, ATP-dependent, N-terminal; IPR012309: DNA ligase, ATP-dependent, C-terminal; IPR012310: DNA ligase, ATP-dependent, central; IPR012340: Nucleic acid-binding, OB-fold; IPR016059: DNA ligase, ATP-dependent, conserved site GO IDs Description via InterPro: GO:0003677 MF: DNA binding; GO:0003909 MF: DNA ligase activity; GO:0003910 MF: DNA ligase (ATP) activity; GO:0005524 MF: ATP binding; GO:0006281 BP: DNA repair; GO:0006310 BP: DNA recombination; GO:0051103 BP: DNA ligation involved in DNA repair; GO:0071897 BP: DNA biosynthetic process
Type	Genomic
Sequence	TraesCS3A01G264800.1 TraesCS3A01G264800.2
Source Species	Triticum aestivum
Source Germplasm	Chinese Spring