Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: TraesCS1D01G002400

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	TraesCS1D01G002400
Locus	TraesCS1D01G002400.3
URL	Pfam PF13920 [ Show all 17 ]
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.
General Remarks	BLAST Hit Accession: tr|A0A1E5VTW6|A0A1E5VTW6_9POAL Human Readable Description: E3 ubiquitin-protein ligase ORTHRUS 2 Pfam IDs Description: PF13920: Zinc finger, C3HC4 type (RING finger); PF02182: SAD/SRA domain; PF13445: RING-type zinc-finger InterPro IDs Description: IPR001841: Zinc finger, RING-type; IPR001965: Zinc finger, PHD-type; IPR003105: SRA-YDG; IPR011011: Zinc finger, FYVE/PHD-type; IPR013083: Zinc finger, RING/FYVE/PHD-type; IPR015947: PUA-like domain; IPR017907: Zinc finger, RING-type, conserved site; IPR019786: Zinc finger, PHD-type, conserved site; IPR019787: Zinc finger, PHD-finger; IPR027370: RING-type zinc-finger, LisH dimerisation motif GO IDs Description via InterPro: GO:0005515 MF: protein binding; GO:0008270 MF: zinc ion binding; GO:0042393 MF: histone binding
Type	Genomic
Sequence	TraesCS1D01G002400.1 TraesCS1D01G002400.2 TraesCS1D01G002400.3
Source Species	Triticum aestivum
Source Germplasm	Chinese Spring