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GrainGenes Probe Report: TraesCS1A01G311400

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	TraesCS1A01G311400
Locus	TraesCS1A01G311400.1
URL	Pfam PF14632 [ Show all 26 ]
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.
General Remarks	BLAST Hit Accession: tr|M7ZNC3|M7ZNC3_TRIUA Human Readable Description: Transcription elongation factor SPT6 Pfam IDs Description: PF14632: Acidic N-terminal SPT6; PF14641: Helix-turn-helix DNA-binding domain of SPT6; PF14639: Holliday-junction resolvase-like of SPT6; PF14635: Helix-hairpin-helix motif; PF14878: Death-like domain of SPT6; PF14633: SH2 domain InterPro IDs Description: IPR000980: SH2 domain; IPR003029: S1 domain; IPR006641: YqgF/RNase H-like domain; IPR010994: RuvA domain 2-like; IPR012337: Ribonuclease H-like domain; IPR012340: Nucleic acid-binding, OB-fold; IPR017072: Transcription elongation factor Spt6; IPR023319: Tex-like protein, HTH domain; IPR023323: Tex-like domain; IPR027999: Death-like domain of Spt6; IPR028083: Spt6 acidic, N-terminal domain; IPR028088: Helix-turn-helix DNA-binding domain of Spt6; IPR028231: Transcription elongation factor Spt6, YqgF domain; IPR032706: Transcription elongation factor Spt6, helix-hairpin-helix motif GO IDs Description via InterPro: GO:0003676 MF: nucleic acid binding; GO:0003677 MF: DNA binding; GO:0006139 BP: nucleobase-containing compound metabolic process; GO:0006357 BP: regulation of transcription from RNA polymerase II promoter; GO:0032784 BP: regulation of DNA-templated transcription, elongation
Type	Genomic
Sequence	TraesCS1A01G311400.1
Source Species	Triticum aestivum
Source Germplasm	Chinese Spring