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GrainGenes Probe Report: HVM3

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HVM3  [ Marker Report ]
Locus	HVM3 HVM0003 HVM003 HVM03 HVM03-4H
Reference	Hearnden PR et al. (2007) A genetic map of 1,000 SSR and DArT markers in a wide barley cross. Theoretical and Applied Genetics 115:383-391. Fu YB et al. (2007) Microsatellite variation in Avena sterilis oat germplasm Theoretical and Applied Genetics 114:1029-1038. Saghai Maroof MA et al. (1994) Extraordinarily polymorphic microsatellite DNA in barley: species diversity, chromosomal locations, and population dynamics. Proceedings of the National Academy of Sciences, USA 91:5466-5470.
General Remarks	Insert contains repeat (AT)29. In 369 Avena sterilis accessions there were 3 alleles of size 138-142 bp, PIC = negative.
Type	Genomic PCR SSR
PCR primers	5' ACACCTTCCCAGGACAATCCATTG 3' 5' AGCACGCAGAGCACCGAAAAAGTC 3' ACACCTTCCCAGGACAATCCATTG AGCACGCAGAGCACCGAAAAAGTC
SSR size	0.188
Amplification Conditions	PCR comprised one cycle of 94oC for 3 min, 55oC for 2 min, and 72oC for 1.5 min, followed by 30 cycles of 94oC for 1 min, 55oC for 2 min, and 72oC for 1.5 min.
Sequence	M55449
Insert Enzyme	TaqI
Source Gene Class	Ribulose bisphosphate carboxylase activase
Source Species	Hordeum vulgare
Source Germplasm	Old ZZ (barley)
DNA Origin	Size-fractionated genomic library screened with synthetic dinucleotide repeats (CA)10 and (GA)10.