GrainGenes Probe Report: AM42
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Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.
Probe
AM42 [ Marker Report ]
Locus
am42 AM42 am42a am42b
Reference
General Remarks
Insert contains repeat (GAA)16 Polymorphic in Kanota/Ogle but not inMarion/Terra. Among 20 oat cultivars, 3 alleles were found, polymorphic information content (PIC) = 0.59. In 369 Avena sterilis accessions there were 6 alleles of size 188-201 bp, PIC = 0.4.
Type
Genomic PCR SSR
PCR primers
5'GCT TCC CGC AAA TCA TCA T
5'GAG TAA GCA AAG GCC AAA AAG T
SSR size
193
Amplification Conditions
Average melting temperature (degrees C) = 45
Source Species
Avena sativa
Source Germplasm
Ogle (oat)
GrainGenes Probe Report: AM42
[Submit comment/correction][What is a probe?]
Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.
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