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GrainGenes Probe Report: AM40

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	AM40
Reference	Li CD et al. (2000) The development of oat microsatellite markers and their use in identifying relationships among Avena species and oat cultivars Theoretical and Applied Genetics 101:1259-1268.
General Remarks	Insert contains repeat (GAA)7 Known repeat = Retrotransposon with 73 % identity over 61 base pairs Among 20 oat cultivars, 1 allele was found.
Type	PCR SSR
PCR primers	5'CTC TGG GGG TGG TAG TTC CT 5'GAA AGA CAG GCC TCC ACA AAT
SSR size	249
Amplification Conditions	Average melting temperature (degrees C) = 49
Source Species	Avena sativa
Source Germplasm	Ogle (oat)