Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: AM18

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	AM18  [ Marker Report ]
Locus	am18 AM18
Reference	Li CD et al. (2000) The development of oat microsatellite markers and their use in identifying relationships among Avena species and oat cultivars Theoretical and Applied Genetics 101:1259-1268.
General Remarks	Insert contains repeat (AC)14 Known repeat = 5'-Alu with 69 % identity over 52 base pairs Among 20 oat cultivars, 1 allele was found.
Type	PCR SSR
PCR primers	5'CAA TGT CGT CGG TGT GAG TTT 5'TAC GAG TGT GGC ACG AGC
SSR size	270
Amplification Conditions	Average melting temperature (degrees C) = 47
Source Species	Avena sativa
Source Germplasm	Ogle (oat)