Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: BQ169999-5D

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	BQ169999-5D
Data at Wheat_SNP	BQ169999-5D
Reference	Akhunov ED et al. (2010) Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes. BMC Genomics 11:702.
General Remarks	SNP DEL;A>T at 224-230;374 SNP INS at 264, 3 Reference sequence GTATGGAATTTGTCAGCAAGTCGTTCCAGCTTCCATACAAGGTTTTTTGCAAACTAAGAAGAACCATCATACTGCATGCCCAACTTTAAGCTACAAGCTAAGCAACAAACTAGGAAAACAGCTACTCCCTCTGTTCCTAAATAGAAGTCTTTTTAGAGATTAAAGGCTTATATTTAGGAACGGAGGGAGTAGCAAATGACCAGACATAAGCTTTGACCATTAATAACATGAGACCAAGTATACCTAGTGGAAATCAAGTAGATGTAACAGACCACATGTTCATTGAGGTAAATATTGAATTAATGCAAATTTCACTATGCAAATGAACATGACATGTGTATATGAAGATAAATATGAGGTGAAATTTGGGAGAAATGTAAATATTACTAAGCAGATGAACAAGAATACTAACCCCAGCCCACTCGCCAAGAGTTTTGGCACTAGGC Reference sequence TGCCCCTCCAGTCAATCTTGCAAAGCTGCATCAAATATAGGATATGGAATTTGTCAGCAAGTCGTTCCAGCTTCCATACAAGGTTTTTTGCAAACTAAGAAGAACCATCATACTGCATGCCCAACTTTAAGCTACAAGCTAAGCAACAAACTAGGAAAACAGCTACTCCCTCTGTTCCTAAATAGAAGTCTTTTTAGAGATTAAAGGCTTATATTTAGGAACGGAGGGAGTAGCAAATGACCAGACATAAGCTTTGACCATTAACATGAGACCAAGTATACCTAGTGGAAATCAAGTAGATGTAACAGACCACATGTTCATTGAGGTAAATATTGAATTAATGCAAATTTCACTATGCAAATGAACATGACATGTGTATATGAAGATAAATATGAGGTGAAATTTGGGAGAAATGTAAATATTACTAAGCAGATGAACAAGAATACTAACCCCAGCCCACTCGCCAAGAGTTTTGGCACTAGGCNCCA
Type	EST SNP
PCR primers	BQ169999_cpR1 GTCACTGTGCCTAGTGCCAA BQ169999D_F1 ATGGAATTTGTCAGCAAGTCG
Linkage Group	5D
Source Species	Triticum aestivum