Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: BF478716-5D

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	BF478716-5D
Data at Wheat_SNP	BF478716-5D
Reference	Akhunov ED et al. (2010) Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes. BMC Genomics 11:702.
General Remarks	SNP T>C;C>T;T>C;A>G;INS;INS;G>A;DEL;C>G;A>G;C>T;C>T;C>A;T>G;C>A;T>G;A>G at 91;113;217;238;238, 4;292, 2;332;411-413;428;431;468;471;480;496;516;535;571 SNP DEL;C>T;A>C;G>A at 163;247;346;606 Reference sequence TGTGCTGCCGACTTTGACAGGTGCATCTTCCAAAAAGATAGCTGGCATTACATTTGATTTGGTAATTATTGACGAGGCTGCTCAGGCACTTGAGGTGGCCTGTTGGATAGCTCTATTGAAGGTAAGTTGAGATAGCAACATGTCTTCCAAAAGTGGATAAATCGTTAACAGTTAAATAGGTATATGTATGTTTGAGGCAGGTTTCTTATATTGGTGTAAATTGTAGCACATAGGTATATCTGATAAAACTCTGTAAGGATGTAACGTTAATCTGCTGTAATTTCCATAAGTGACCAGTAGGCAGATCCTAGGGAGTATAGTTTTGCTTTACGGTCACGGCACCCTGCTTCTGGTGGTTGATTAGCTTTGGGATTTTCAAATGGTGGTAGCTGACTATGCCATTAGCAATGAAGTTGTTTCTCTGTTTCACATGATTGGCATGCATAATGATTTGGATAAAATGCTTACTCCTATGTTCTCGTTAAGGTAGCATTTTTGTTAATGTTATGGAGCTTCTCATTTATGTATTAATCTTTTTTATATTCTTTTGGTATTCAGGGCCAAAGGTGCATGCTTGCTGGAGACCATCTTCAACTTCCTCCAACGACCC Reference sequence GCTGATGTCATAAAAAATGCAGATGTTGTACTGTCGACTTTGACAGGTGCATCTACCAAAAAGCTAGCTGGCATTACATTTGATTTGGTAATTATTGATGAGGCTGCTCAGGCACTCGAGGTGGCATGTTGGATAGCCTTACTGAAGGTAAGTCGTAACTTAATACAGTTACAATGAAAGTTGAGATAGCAACATACATGCCTTTCAAAAGAGAATAAATTGTTAATGGTTAAATAGGTTTATGTACTTATATATTCATTGAGGAATCATCGGTCTATGTATGTTTGAGGCAGGTTTCTTATATTGGTGTAAATTGTAGCACGTCGGTATGGATATAAGATAAAAATCTGTAATGATGCAATGTTAATCTGCTGTAATCTCCATAAGTGTGACCAGTAGACAGATCCTAGGGAATATAGTTTTGGCTTTACAGTCATGGTATCCTGCTTCTGGTGGTTCATTAGTTTTGGGATTCTCAAATGGTGGTAGCTGGCTATGCCATCACCAATGCAGTTGTTTCTGTGTTTGACATGATTGGCATGTATAATGATTTGGATGAAAGGGTTACTCTTATGTTCTTGTTAAGTTAGCATTTGTGTTATGGAGCTTCTCATTTATATACTTATTTATTTGATATTCTTTTGGTATTCAGGGGCCAAGGTGCGTGCTTGCTGGAGACCATCTTCAACTTCCTCCAC
Type	EST SNP
PCR primers	BF478716B_F1 ATGCGGATGTTGTGCTGCCG BF478716_cpR1 ACACTTTGGATCGTTGGAGG
Sequence	NSFT03P2_Contig5001
Linkage Group	5D
Source Species	Triticum aestivum