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GrainGenes Marker Report: scssr12344

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Locus	scssr12344
Type	Microsatellite SNP
Synonym	Other name Ctig10373 Synonym ABC12344_L01R01
Chromosome	2H
Map	Barley, B73xCPI-2H 71.7 [ Show all 9 ]
	[ Show Nearby Loci ]
Map Data	Barley, Abiotic QTL Consensus [ Show all 9 ]
Species	Hordeum vulgare
Probe	ABC12344_L01R01 scssr12344
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Ramsay L et al. (2004) Variation shown by molecular markers in barley: genomic and genetic contraints Aspects of Applied Biology 72:146-154.
Data Source	Russell, Joanne
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : OWBrecessive x OWBdominant Insert contains repeat (GT)8 Developing laboratory = SCRI (R. Waugh)
Probe for Locus	ABC12344_L01R01
Locus	scssr12344
Data at Germinate	ABC12344
Data at PLEXdb	Barley1_12344
General Remarks	Estimated product size = 189 BarleySNP type = Contig Indel Technology platform used = Radioisotope Labelled PCR Separation Affymetrix contig name = abc12344
PCR primers	5' TTCCCTTCCCTCTTTCTTTC 5' AATTTACTGCATATCTTGTTCATATTG
Sequence	Barley1_12344
Source Species	Hordeum vulgare