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GrainGenes Marker Report: scssr05939

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Locus	scssr05939
Type	Microsatellite SNP
Synonym	Other name Ctig4437 Synonym ABC05939_L01R01
Chromosome	5H
Map	Barley, B73xCPI-5H 86.5 [ Show all 9 ]
	[ Show Nearby Loci ]
Map Data	Barley, Abiotic QTL Consensus [ Show all 9 ]
Species	Hordeum vulgare
Probe	ABC05939_L01R01 scssr05939
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Ramsay L et al. (2004) Variation shown by molecular markers in barley: genomic and genetic contraints Aspects of Applied Biology 72:146-154.
Data Source	Russell, Joanne
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' [ Show all 6 ]
Probe for Locus	ABC05939_L01R01
Locus	scssr05939
Data at Germinate	ABC05939
Data at PLEXdb	Barley1_05939
General Remarks	Estimated product size = 158 BarleySNP type = Contig Indel Technology platform used = Radioisotope Labelled PCR Separation Affymetrix contig name = abc05939
PCR primers	5' TCATTGGGCTCTTCTACGG 5' GCAAACCGGACTAAGTATGC
Sequence	Barley1_05939
Source Species	Hordeum vulgare