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GrainGenes Marker Report: k10406

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Locus	k10406
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 85.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bast74C0705
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = C/G SNP structure (UNICODE) = CTAGCAGCAGSAGGAGGACTA Parent 1 SNP sequence = CTAGCAGCAGCAGGAGGACTA Parent 2 SNP sequence = CTAGCAGCAGGAGGAGGACTA
Probe for Locus	bast74C0705
Locus	k10406
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative r40c2 protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CCACTGGAACCAGCCAATAC Right 5' - CAACGGAGCTGAACATCAGA
Sequence	AV927802
PCR size	155