Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k08907

[Submit comment/correction]

Locus	k08907
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 106
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH38E07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = A/G SNP structure (UNICODE) = GTTACATCCCRTCTGCTCAAA Parent 1 SNP sequence = GTTACATCCCATCTGCTCAAA Parent 2 SNP sequence = GTTACATCCCGTCTGCTCAAA
Probe for Locus	BaH38E07
Locus	k08907
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative hydroxyproline-rich glycoprotein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TCTTGCACCAGAGACACGAC Right 5' - GGAGGACATGAAGGGAAACA
Sequence	AV836166
PCR size	373