Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k06493

[Submit comment/correction]

Locus	k06493
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 111.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK32N04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = G/C SNP structure (UNICODE) = GTGAAAAAGTSACCGCTTCTC Parent 1 SNP sequence = GTGAAAAAGTGACCGCTTCTC Parent 2 SNP sequence = GTGAAAAAGTCACCGCTTCTC
Probe for Locus	BaAK32N04
Locus	k06493
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative shaggy-like kinase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGGAACAGGACAAATCACACA Right 5' - GGCTCCAACCGTTAAACAGA
Sequence	BJ458635
PCR size	353