Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k04390

[Submit comment/correction]

Locus	k04390
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 102.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah51m11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = C/G SNP structure (UNICODE) = ATTTATCCGTSGAGACCGAGA Parent 1 SNP sequence = ATTTATCCGTCGAGACCGAGA Parent 2 SNP sequence = ATTTATCCGTGGAGACCGAGA
Probe for Locus	bah51m11
Locus	k04390
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative angio-associated migratory cell protein [Oryza sativa]
Type	PCR
PCR primers	Left 5' - CAAATAACCGGCAGGTAACG Right 5' - GGAGTCGATGAAGTATGCCC
Sequence	BJ484520
PCR size	460