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GrainGenes Marker Report: k00886

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Locus	k00886
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 295.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal15i11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = A/G SNP structure (UNICODE) = AACCACCCTGRAAGAAAACTC Parent 1 SNP sequence = AACCACCCTGAAAGAAAACTC Parent 2 SNP sequence = AACCACCCTGGAAGAAAACTC
Probe for Locus	baal15i11
Locus	k00886
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative chromosome region maintenance protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CACGCACACACACATCTTTTT Right 5' - CAGCGCTTCCATTTGTTTCT
Sequence	BJ473588
PCR size	386