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GrainGenes Marker Report: cdo673b

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Locus	cdo673b
Type	RFLP
Map	Oat-2004-P48xP38_1 2 Oat-KxO/2003-17 6.46
	[ Show Nearby Loci ]
Map Data	Oat, KxO, 2003 Oat-2004-P48xP38
Species	Avena sativa
Probe	CDO673
Homology	AC012188_16 e-value: 2e-23 (AC012188) Contains similarity to a Receptor-like Protein Kinase 5 Precursor from Arabidopsis thaliana gi|1350783 and contains an Eukaryotic Protein Kinase PF|00069 domain and Leucine Rich PF|00560 repeats. D81906 e-value: 2.1 probable GTP-binding protein NMA1370 [imported] - Neisseria meningitidis (group A strain Z2491) Z2491] AC012188_16 e-value: 2e-21 (AC012188) Contains similarity to a Receptor-like Protein Kinase 5 Precursor from Arabidopsis thaliana gi|1350783 and contains an Eukaryotic Protein Kinase PF|00069 domain and Leucine Rich PF|00560 repeats.
Reference	Wight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) Molecular Breeding 14:349-361.
Remark	Marker placement value = 1.54 cM on map Oat-KxO/2003-17 Marker is not a framework marker on map Oat-KxO/2003-17
Possible Orthologs	CDO673 [ Show all 8 ]
Probe for Locus	CDO673
Locus	CDO673 [ Show all 9 ]
Synonym	Synonym HAR35_5301
External Databases	DDBJ EMBL GenBank
Reference	Wight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) Molecular Breeding 14:349-361. Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks	Uni-ZAP XR library OatUni-ZAPXR [c]
Type	cDNA STS
PCR primers	GCC ATT GGT ATT GCG AGA GG ACG AGC GTC AGT CGG TCA CT
Sequence	BE439193 [ Show all 8 ]
Linkage Group	1LS
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.1
PCR size	1.1