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GrainGenes Marker Report: cdo57b

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Locus	cdo57b
Type	RFLP
Synonym	Synonym CDO57
Chromosome	5H 7A 7D 7H
Chromosome Arm	7AS 7BS
Map	Barley-consensus-2003-7H 80.1 [ Show all 19 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QHt.StMo-5H [ Show all 6 ]
Map Data	Barley consensus 2 [ Show all 20 ]
Probe	CDO57
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19 Langridge, Peter J.
Remark	Number of populations contributing to the placement of CDO57B in the Barley, Consensus 2006 DArT maps = 1 Marker placement value = 0.00 cM on map Oat-KxO/2003-11_41+20 Marker is not a framework marker on map Oat-KxO/2003-11_41+20
Possible Orthologs	CDO057 [ Show all 29 ]
Probe for Locus	CDO57
Locus	Xcdo57-2 [ Show all 33 ]
Related Probe	BCD981 [ Show all 6 ]
	Hybridization_homologue: The two clones were isolated independently but exhibit the same RFLP patterns when hybridized to DNA from test genotypes, and thus are closely related in sequence.
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks	Uni-ZAP XR library OatUni-ZAPXR [c]
Type	cDNA
Sequence	BQ548073 BQ548072 CDO57-5 CDO57-3
Polymorphism	CDO57 EcoRV CDO57 EcoRI CDO57 XbaI
Linkage Group	7L,5L [b 2S]
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.6
PCR size	1.6