GrainGenes Marker Report: Xcfd9-3D
Locus
Xcfd9-3D
Type
Microsatellite
Chromosome
3D
Chromosome Arm
3DL
Map
Chinese_Spring_Deletion_SSR_3D 0.905 Louise/Penawawa-3D 124.3 Ta-Courtot/CS-GPW-3D 227.1 Ta-SSR-2004-3D 35.7 Triticum-AxF-3D 204.8
[ Show Nearby Loci ]
QTL with Locus Marker
Qsst.msub-3DL
Breakpoint Interval
3DL3-0.81-1.00
Map Data
Wheat, Arina x Forno Wheat, Consensus SSR, 2004 Wheat, Courtot x Chinese Spring, GPW Wheat, Louise x Penawawa Wheat, Physical, SSR
Species
Triticum aestivum
Probe
CFD9
Reference
Possible Orthologs
Xcfd9 cfd9 cfd9-3D.2
Probe for Locus
CFD9
Locus
Xcfd9-3D Xcfd9 cfd9 cfd9-3D.2
Reference
Guyomarc'h H et al. (2002) Characterisation of polymorphic microsatellite markers from Aegilops tauschii and transferability to the D-genome of bread wheat Theoretical and Applied Genetics 104:1164-1172.
General Remarks
Quality Score = A Quality scores reflect the quality of amplification (from A very good quality to D multiple banding pattern : A and B can be used on capillary systems) Amplifies motif: (TC)29 Regularity of motif is perfect
Type
PCR SSR
PCR primers
Forward 5' TTGCACGCACCTAAACTCTG 3'
Reverse 5' CAAGTGTGAGCGTCGG 3'
SSR size
209
Amplification Conditions
5 minutes at 94 degrees; 30 cycles (94 degrees for 30 seconds; 60 degrees for 30 seconds; 72 degrees for 30 seconds); 10 minutes at 72 degrees
Linkage Group
3D
Source Species
Aegilops tauschii
GrainGenes Marker Report: Xcfd9-3D
|
| |||||||||||
|
| |||||||||||
|
| |||||||||||
|
| |||||||||||
|
| |||||||||||
| ||||||||||||
|
| |||||||||||
|
| |||||||||||
|
| |||||||||||
|
| |||||||||||
|
| |||||||||||
| ||||||||||||
|
| |||||||||||
|
| |||||||||||
|
| |||||||||||
|
| |||||||||||
|
| |||||||||||
|
| |||||||||||
|
| |||||||||||
|
| |||||||||||
|
| |||||||||||
|
| |||||||||||
|
|