Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: Xcfd9

[Submit comment/correction]

Locus	Xcfd9
Type	Microsatellite
Chromosome	3D
Map	Wheat, Avalon x Cadenza 3D 46 Wheat-Composite2004-3D 103
	[ Show Nearby Loci ]
Map Data	Wheat, Avalon x Cadenza Wheat, Composite, 2004
Probe	CFD9
Possible Orthologs	Xcfd9-3D cfd9 cfd9-3D.2
Probe for Locus	CFD9
Locus	Xcfd9-3D Xcfd9 cfd9 cfd9-3D.2
Reference	Guyomarc'h H et al. (2002) Characterisation of polymorphic microsatellite markers from Aegilops tauschii and transferability to the D-genome of bread wheat Theoretical and Applied Genetics 104:1164-1172.
General Remarks	Quality Score = A Quality scores reflect the quality of amplification (from A very good quality to D multiple banding pattern : A and B can be used on capillary systems) Amplifies motif: (TC)29 Regularity of motif is perfect
Type	PCR SSR
PCR primers	Forward 5' TTGCACGCACCTAAACTCTG 3' Reverse 5' CAAGTGTGAGCGTCGG 3'
SSR size	209
Amplification Conditions	5 minutes at 94 degrees; 30 cycles (94 degrees for 30 seconds; 60 degrees for 30 seconds; 72 degrees for 30 seconds); 10 minutes at 72 degrees
Linkage Group	3D
Source Species	Aegilops tauschii