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GrainGenes Marker Report: Xcfd71-4D

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Locus
Xcfd71-4D
Type
Microsatellite
Chromosome
4D
Map
Chinese_Spring_Deletion_SSR_4D0.155
Conan/Reeder-4D163
P91193D1/P92201D5-4D53.8
Ta-Courtot/CS-GPW-4D-3.6
Ta-SSR-2004-4D33.2
[ Show Nearby Loci ]
QTL with Locus Marker
QPro.inra-4D
Breakpoint Interval
C-4DL9-0.31
Map Data
Wheat, Conan x Reeder
Wheat, Consensus SSR, 2004
Wheat, Courtot x Chinese Spring, GPW
Wheat, P91193D1 x P92201D5
Wheat, Physical, SSR
Probe
CFD71
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs
Xcfd71-4A
[ Show all 6 ]
Probe for Locus
CFD71
Locus
Xcfd71-4D
[ Show all 8 ]
Reference
ReferenceHiebert CW et al. (2010) An introgression on wheat chromosome 4DL in RL6077 (Thatcher*6/PI 250413) confers adult plant resistance to stripe rust and leaf rust (Lr67) Theoretical and Applied Genetics 121:1083-1091.
ReferenceGuyomarc'h H et al. (2002) Characterisation of polymorphic microsatellite markers from Aegilops tauschii and transferability to the D-genome of bread wheat Theoretical and Applied Genetics 104:1164-1172.
ReferenceHiebert CW MAS Wheat. Bringing Genomics to the Wheat Fields. Disease Resistance. Leaf Rust Resistance. Lr67 MAS Wheat. Marker Assisted Selection in Wheat.
General Remarks
Quality Score = B
Quality scores reflect the quality of amplification (from A very good quality to D multiple banding pattern : A and B can be used on capillary systems)
Amplifies motif: (CA)10(GA)30
Regularity of motif is perfect
Type
PCR
SSR
PCR primers
Forward 5' CAATAAGTAGGCCGGGACAA 3'
Reverse 5' TGTGCCAGTTGAGTTTGCTC 3'
SSR size
216
Amplification Conditions
5 minutes at 94 degrees; 30 cycles (94 degrees for 30 seconds; 60 degrees for 30 seconds; 72 degrees for 30 seconds); 10 minutes at 72 degrees
Linkage Group
4D/4A
Source Species
Aegilops tauschii