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GrainGenes Marker Report: Xcfd40-5D

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Locus	Xcfd40-5D
Type	Microsatellite
Chromosome	5D
Chromosome Arm	5DS
Map	Chinese_Spring_Deletion_SSR_5D 0.3 [ Show all 6 ]
	[ Show Nearby Loci ]
Breakpoint Interval	C-5DL1-0.60
Map Data	Wheat, Arina x Forno [ Show all 6 ]
Species	Triticum aestivum
Probe	CFD40
Reference	Somers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114. Paillard S et al. (2003) An integrative genetic linkage map of winter wheat (Triticum aestivum L.) Theoretical and Applied Genetics 107:1235-1242.
Possible Orthologs	Xcfd40 Xcfd40-5A cfd40 cfd40-5D
Probe for Locus	CFD40
Locus	Xcfd40-5D Xcfd40 Xcfd40-5A cfd40 cfd40-5D
Reference	Guyomarc'h H et al. (2002) Characterisation of polymorphic microsatellite markers from Aegilops tauschii and transferability to the D-genome of bread wheat Theoretical and Applied Genetics 104:1164-1172.
General Remarks	Quality Score = B Quality scores reflect the quality of amplification (from A very good quality to D multiple banding pattern : A and B can be used on capillary systems) Amplifies motif: (TAA)5 Regularity of motif is perfect
Type	PCR SSR
PCR primers	Forward 5' GCGACAAGTAATTCAGAACGG 3' Reverse 5' CGCTTCGGTAAAGTTTTTGC 3'
SSR size	223
Amplification Conditions	5 minutes at 94 degrees; 30 cycles (94 degrees for 30 seconds; 60 degrees for 30 seconds; 72 degrees for 30 seconds); 10 minutes at 72 degrees
Linkage Group	5D
Source Species	Aegilops tauschii