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GrainGenes Marker Report: Xcfd12

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Locus	Xcfd12
Type	Microsatellite
Chromosome	5D
Map	Wheat, UC1110 x PI610750 5D 146.1 Wheat-Composite2004-5D 50
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Map Data	Wheat, Composite, 2004 Wheat, UC1110 x PI610750
Probe	CFD12
Reference	Lowe I et al. (2011) Mapping and validation of QTL which confer partial resistance to broadly virulent post-2000 North American races of stripe rust in hexaploid wheat Theoretical and Applied Genetics 123:143-157.
Possible Orthologs	Xcfd12-5A Xcfd12-5D cfd12 cfd12-5D
Probe for Locus	CFD12
Locus	Xcfd12-5D Xcfd12 Xcfd12-5A cfd12 cfd12-5D
Reference	Guyomarc'h H et al. (2002) Characterisation of polymorphic microsatellite markers from Aegilops tauschii and transferability to the D-genome of bread wheat Theoretical and Applied Genetics 104:1164-1172.
General Remarks	Quality Score = B Quality scores reflect the quality of amplification (from A very good quality to D multiple banding pattern : A and B can be used on capillary systems) Amplifies motif: (CTT)6 Regularity of motif is imperfect
Type	PCR SSR
PCR primers	Forward 5' GTTACCCAAACCTGCCCTTT 3' Reverse 5' CTACGAGTCGGGATCAGCAT 3'
SSR size	192
Amplification Conditions	5 minutes at 94 degrees; 30 cycles (94 degrees for 30 seconds; 60 degrees for 30 seconds; 72 degrees for 30 seconds); 10 minutes at 72 degrees
Linkage Group	5D
Source Species	Aegilops tauschii