Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: Xcfa2193

[Submit comment/correction]

Locus	Xcfa2193
Type	Microsatellite
Chromosome	3A
Map	Wheat, UC1110 x PI610750 3A 130.3 Wheat-Composite2004-3A 171
	[ Show Nearby Loci ]
Map Data	Wheat, Composite, 2004 Wheat, UC1110 x PI610750
Probe	CFA2193
Reference	Lowe I et al. (2011) Mapping and validation of QTL which confer partial resistance to broadly virulent post-2000 North American races of stripe rust in hexaploid wheat Theoretical and Applied Genetics 123:143-157.
Possible Orthologs	Xcfa2193-3A cfa2193 cfa2193-3A
Probe for Locus	CFA2193
Locus	Xcfa2193-3A Xcfa2193 Sr35 cfa2193 cfa2193-3A
Reference	Sourdille P et al. (2001) Improvement of the genetic maps of wheat using new microsatellite markers Plant & Animal Genome IX Abstracts 167.
General Remarks	Quality Score = B Quality scores reflect the quality of amplification (from A very good quality to D multiple banding pattern : A and B can be used on capillary systems) Amplifies motif: (GT)12 Regularity of motif is perfect
Type	PCR SSR
PCR primers	Forward 5' ACATGTGATGTGCGGTCATT 3' Reverse 5' TCCTCAGAACCCCATTCTTG 3'
SSR size	195
Amplification Conditions	5 minutes at 94 degrees; 30 cycles (94 degrees for 30 seconds; 60 degrees for 30 seconds; 72 degrees for 30 seconds); 10 minutes at 72 degrees
Linkage Group	3A
Source Species	Triticum urartu