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GrainGenes Marker Report: Phs1 (Triticum)

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Gene	Phs1 (Triticum)
Synonym	Other name Phs (Triticum) Synonym Phs1
Gene Class	Pre-harvest sprouting
Locus	Phs1
Candidate Locus	TraesCS3A02G006600.1
Reference	Cheng S et al. (2024) Harnessing Landrace Diversity Empowers Wheat Breeding for Climate Resilience Nature. Rasheed A et al. (2023) Genome-Informed Discovery of Genes and Framework of Functional Genes in Wheat The Wheat Genome 9. Torada A et al. (2008) Mapping of a major locus controlling seed dormancy using backcrossed progenies in wheat (Triticum aestivum L.) Genome 51:426-432. Long DL et al. (1998) Virulence and Diversity of Wheat Leaf Rust in the United States in 1993 to 1995 Plant Disease 82:1391-1400.
URL	Phs1 gene at Komugi: Catalogue of Gene Symbols for Wheat
QTL Associated with Gene	QPhs.hwwgr-3AS
Chromosome	3A
Chromosome Arm	4AL Flintham J et al. (2002) Mapping genes for resistance to sprouting damage in wheat. Euphytica 126:39-45.
Germplasm	Hexaploid stock Leader Torada A et al. (2008) Mapping of a major locus controlling seed dormancy using backcrossed progenies in wheat (Triticum aestivum L.) Genome 51:426-432. Os21-5 Torada A et al. (2008) Mapping of a major locus controlling seed dormancy using backcrossed progenies in wheat (Triticum aestivum L.) Genome 51:426-432. Soleil Flintham J et al. (2002) Mapping genes for resistance to sprouting damage in wheat. Euphytica 126:39-45. Near isogenic stock Haruyokoi*6/Leader Torada A et al. (2008) Mapping of a major locus controlling seed dormancy using backcrossed progenies in wheat (Triticum aestivum L.) Genome 51:426-432. Haruyokoi*6/Os21-5 Torada A et al. (2008) Mapping of a major locus controlling seed dormancy using backcrossed progenies in wheat (Triticum aestivum L.) Genome 51:426-432.
Comment	Associated with Xpsr1327-4A (Long et al., 1998) Xhbe03-4AL - 0.5 cM - Phs1 - 2.1 cM - Xbarc170-4AL (Torada et al., 2008) Semi-dominant (Flintham et al., 2002)
Clone	TraesCS3A02G006600
Sequence	TraesCS3A02G006600.1
Data Curator	Cooper, Laurel May-2020
Locus Associated with Gene	Phs1
Type	Trait
Chromosome	4A
Chromosome Arm	4AL
Map	Wheat-Composite2004-4A 77
	[ Show Nearby Loci ]
Species	Triticum aestivum
Probe	BARC170
Associated Gene	Phs1 (Triticum)
Gene Class	Pre-harvest sprouting
Remark	Trait marker Xbarc170-4AL Nearby marker on Composite map: Xbarc170 Position on Composite map estimated by GrainGenes.
Locus Candidate for Gene	TraesCS3A02G006600.1
Type	gene
Synonym	Synonym TraesCS3A03G0015600
Chromosome	3A
Species	Triticum aestivum
Probe	TraesCS3A02G006600
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.

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