Query (optional)   in Class  

GrainGenes Marker Report: PSR156

[Submit comment/correction]

Locus
psr156
Type
RFLP
Synonym
Synonympsr156
Chromosome
3H
5H
Chromosome Arm
3HL
Map
Barley-consensus-2003-5H19
[ Show all 16 ]
[ Show Nearby Loci ]
Map Data
3B Physical
[ Show all 16 ]
Probe
PSR156
Reference
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Blake, Tom05.04.19
Langridge, Peter J.
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
PSR156a
[ Show all 9 ]



Probe
PSR156
Locus
psr156
[ Show all 9 ]
Synonym
SynonymHAR35_2806
Remarks
Polymorphism scores are given as the percent polymorphic pairwise comparisons, followed by the number of alleles found and number of varieties tested in parentheses.
Type
cDNA
Sequence
PSR156 Forward
PSR156 Reverse
AJ440586
Copy Number
1
Background
0
Cross hybridizes to
Secale cerealegood
Hordeum vulgaregood
Polymorphism
PSR156 H EcoRI53.8 (2, 13)
[ Show all 15 ]
Gel
PSR156 Gale
Linkage Group
3AL
[ Show all 6 ]
Insert Enzyme
SmaI
Source Species
Triticum aestivum
Source Germplasm
Chinese Spring
Source Tissue
Leaf
Insert Size
1