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GrainGenes Marker Report: MWG835A
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Locus
MWG835A

Type
CAPS
RFLP

Synonym
Synonym MWG835

Chromosome
1H

Map
Hordeum-Bins-1H 11.3

[ Show all 11 ]

[ Show Nearby Loci ]

Map Data
Barley, Abiotic QTL Consensus

[ Show all 11 ]

Species
Hordeum vulgare

Probe
MWG835
MWG835A

Reference

Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.

Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.

Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.

Remark
Number of populations contributing to the placement of MWG835A in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = L94 x Vada, Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : L94 x Vada; Oregon Wolfe Dom x Rec; Steptoe x Morex

Possible Orthologs
MWG835

[ Show all 6 ]

Probe for Locus
MWG835

Locus
MWG835

[ Show all 7 ]

Reference

Marcel TC et al. (2007) A high-density consensus map of barley to compare the distribution of QTLs for partial resistance to Puccinia hordei and of defence gene homologues. Theoretical and Applied Genetics 114:487-500.

Type
Genomic
STS

STS primers
5' TTCCCTATTCAAGCCATCAGCAAA
5' GTAACCCATAGATAGCATCTTGTG

STS size
565

Amplification Conditions
5 min at 94 deg C; 35 cycles with 30 sec at 94 deg C, 30 sec at 65 deg C, and 1 min at 72 deg C; and a final extension step of 7 min at 72 deg C

Sequence
AJ234580
MWG835-5

Insert Enzyme
PstI

Source Species
Hordeum vulgare