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GrainGenes Marker Report: HvUDPGPP

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Locus	HvUDPGPP
Type	Microsatellite
Chromosome	4H + 5H 5H
Map	Hordeum-Consensus2006-DArT-5H 109.8 Hordeum-Graner2-5H 115.9 Hordeum-Pillen-5H 91
	[ Show Nearby Loci ]
QTL with Locus Marker	QHea.pil-5H.2 QTgw.pil-5H.2
Map Data	Barley, AxHs/QTL Barley, Consensus 2006, DArT Barley, IxF
Probe	HvUDPGPP
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Pillen K et al. (2000) Mapping new EMBL-derived barley microsatellites and their use in differentiating German barley cultivars Theoretical and Applied Genetics 101:652-660.
Remark	Assigned to a barley chromosome by PCR screening of wheat barley addition lines Number of populations contributing to the placement of HvUDPGPP in the Barley, Consensus 2006 DArT maps = 1
Probe	HvUDPGPP
Locus	HvUDPGPP
Synonym	Synonym HAR35_25587 HAR35_29334
Reference	Pillen K et al. (2000) Mapping new EMBL-derived barley microsatellites and their use in differentiating German barley cultivars Theoretical and Applied Genetics 101:652-660.
Remarks	Insert contains repeat (gcc)4
Type	SSR
PCR primers	Left 5' CTCCTCCTCCCTCCTCTCCG Right 5' AACCCGGCCTTCTCGTTTTC
SSR size	129
Amplification Conditions	Low Stringency: 35 cycles of 1 min at 94 deg C; 1 min at 50 deg C; 2 min at 72 deg C; and a final extension step of 5 min at 72 deg C
Sequence	X91347
Source Species	Hordeum vulgare