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GrainGenes Marker Report: HvLTPPB

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Locus
HvLTPPB
Type
Microsatellite
Synonym
SynonymHvLTPPB
HvLTPPB.2
Chromosome
3 (3H)
3H
Map
Barley, B73xCPI-3H18.3
[ Show all 15 ]
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 15 ]
Species
Hordeum spontaneum
Hordeum vulgare
Hordeum vulgare subsp. spontaneum
Probe
HvLTPPB
HvLTPPB.2
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferencePillen K et al. (2000) Mapping new EMBL-derived barley microsatellites and their use in differentiating German barley cultivars Theoretical and Applied Genetics 101:652-660.
ReferenceRamsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark
Assigned to a barley chromosome by PCR screening of wheat barley addition lines
[ Show all 8 ]
Probe for Locus
HvLTPPB.2
Locus
HvLTPPB
Reference
ReferencePillen K et al. (2000) Mapping new EMBL-derived barley microsatellites and their use in differentiating German barley cultivars Theoretical and Applied Genetics 101:652-660.
General Remarks
Insert contains repeat (ac)10
Type
SSR
PCR primers
Left 5' TGCTGAGACGCTGAGTACGTTG
Right 5' CAAACTCACGATTCCTCTCAAAG
SSR size
216
Amplification Conditions
Low Stringency: 35 cycles of 1 min at 94 deg C; 1 min at 50 deg C; 2 min at 72 deg C; and a final extension step of 5 min at 72 deg C
Sequence
Z37115
Source Species
Hordeum vulgare