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GrainGenes Marker Report: GMS3

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Locus	GMS3
Type	Microsatellite
Synonym	Synonym GMS003
Chromosome	2H
Map	Barley-consensus-2003-2H 69.9 Hordeum-Consensus2006-DArT-2H 79.6 Hordeum-Pillen-2H 48
	[ Show Nearby Loci ]
QTL with Locus Marker	QHea.pil-2H.2 QTgw.pil-2H.2
Map Data	Barley consensus 2003 Barley, AxHs/QTL Barley, Consensus 2006, DArT
Probe	GMS3
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Data Source	Langridge, Peter J.
Remark	Number of populations contributing to the placement of GMS3 in the Barley, Consensus 2006 DArT maps = 1
Probe	GMS3
Locus	GMS0003 GMS003 GMS3
Reference	Hayden MJ et al. (2008) Multiplex-Ready PCR: A new method for multiplexed SSR and SNP genotyping BMC Genomics 9:80. Hearnden PR et al. (2007) A genetic map of 1,000 SSR and DArT markers in a wide barley cross. Theoretical and Applied Genetics 115:383-391. Struss D and Plieske J (1998) The use of microsatellite markers for detection of genetic diversity in barley populations. Theoretical and Applied Genetics 97:308-315.
Remarks	Annealing temperature = 60 deg C Insert contains repeat (gt)15
Type	SSR
PCR primers	5' TTTCAGCATCACACGAAAGC 5' TTGCATGCATGCATACCC Forward TTTCAGCATCACACGAAAGC Reverse TTGCATGCATGCATACCC TTTCAGCATCACACGAAAGC TTGCATGCATGCATACCC
SSR size	144