GrainGenes Marker Report: GMS002
Locus
GMS002
Type
Microsatellite
Chromosome
5H
Map
Barley-ConsensusFHB-5H 195.25 Hordeum-Consensus2007-SSR-5H 183.75 Hv-Consensus2006-Marcel-5H 183.75 Hv-Integrated2009-5H 178.7 Hv-L94/Vada-2006-5H 168.21
[ Show Nearby Loci ]
QTL with Locus Marker
MQTL_Du2024.Breed-quality-5H.7
Map Data
Barley, Consensus 2006, Marcel Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009 Barley, L94 x Vada, 2006
Species
Hordeum vulgare
Probe
GMS2
Reference
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
[ Show all 7 ]
Probe for Locus
GMS2
Locus
GMS0002 GMS002
Reference
Hayden MJ et al. (2008) Multiplex-Ready PCR: A new method for multiplexed SSR and SNP genotyping BMC Genomics 9:80.
Hearnden PR et al. (2007) A genetic map of 1,000 SSR and DArT markers in a wide barley cross. Theoretical and Applied Genetics 115:383-391.
Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
Waugh R and Marshall DF (2005) Barley SSRs from the Scottish Crop Research Institute.
Struss D and Plieske J (1998) The use of microsatellite markers for detection of genetic diversity in barley populations. Theoretical and Applied Genetics 97:308-315.
General Remarks
SSR motif: (CT)18
Type
SSR
PCR primers
CCGACAACATGCTATGAAGC
CTGCAGCAAATACCCATGTG Forward CCGACAACATGCTATGAAGC
Reverse CTGCAGCAAATACCCATGTG
SSR size
131
Amplification Conditions
35-45 cycles: 1 min @ 94C, 1 min @ 60C, 2 min @ 72C; 1 cycle: 60 mins @ 72C.
GrainGenes Marker Report: GMS002
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