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GrainGenes Marker Report: EBmac0674

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Locus	EBmac0674
Type	Microsatellite
Synonym	Synonym EBmac674
Chromosome	6H
Map	Barley-ConsensusFHB-6H 59.92 [ Show all 7 ]
	[ Show Nearby Loci ]
Map Data	Barley, Abiotic QTL Consensus [ Show all 7 ]
Species	Hordeum spontaneum Hordeum vulgare
Probe	EBmac0674 EBmac674
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark	Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : Lina x H. spontaneum Insert contains repeat (TG)18(AG)9 Polymorphic Information Content (PIC) = 0.13 Developing laboratory = SCRI (R. Waugh)
Possible Orthologs	EBmac674
Probe for Locus	EBmac674
Locus	EBmac0674 EBmac674
Synonym	Other name EBmac0674
Reference	Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
General Remarks	Insert contains repeat (TG)18(AG)9 Quality = 2: Single product, relatively strong stutter bands Diversity Index (DI) = 0.13
Type	PCR SSR
PCR primers	5' GAACGTATAGCAGGAGCAA 3' 5' CATCGTTCCCTTCATGAT 3'
SSR size	147
Amplification Conditions	1 cycle of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 30 cycles of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 1 cycle of 5 mins @ 72C.
Source Species	Hordeum vulgare