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GrainGenes Marker Report: CDO749

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Locus	CDO749
Type	RFLP
Synonym	Synonym CDO749
Chromosome	2B 5H
Chromosome Arm	5HS
Map	Barley-consensus-2003-5H 22.7 [ Show all 18 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QPm.PrNu-5H
Map Data	Barley consensus [ Show all 19 ]
Probe	CDO749
Homology	NARB_SYNP7 e-value: 5.1 NITRATE REDUCTASE (strain PCC 7942) AC006550_8 e-value: 2e-55 (AC006550) Identical to gb precursor protein from Arabidopsis thaliana. ESTs gb|H35836, gb|AA651295 and gb|AA721862 come from this gene.
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19 Langridge, Peter J.
Remark	Number of populations contributing to the placement of CDO749 in the Barley, Consensus 2006 DArT maps = 2 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	CDO749B [ Show all 12 ]
Probe	CDO749
Locus	CDO749 [ Show all 13 ]
Synonym	Synonym HAR35_26576 HAR35_35245 HAR35_7834
External Databases	DDBJ EMBL GenBank
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type	cDNA STS
PCR primers	TCTCAGGAGCAGGTCAGTTA GCGGAGTAGTATTAGTCACA
Sequence	BE439150 [ Show all 7 ]
Polymorphism	CDO749 EcoRI
Linkage Group	5S,2L[b7SH] 2L,5S [b 7S]
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.8
PCR size	1.8