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GrainGenes Marker Report: CDO537

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Locus	CDO537
Type	RFLP
Synonym	Synonym Az94 (Hordeum) POPA3_0251
Chromosome	2H
Chromosome Arm	2HS
Map	Barley-Consensus-2H -3.5 [ Show all 13 ]
	[ Show Nearby Loci ]
Map Data	Barley consensus [ Show all 13 ]
Probe	CDO537
Associated Gene	Az94 (Hordeum) yst4 (Hordeum)
Homology	T51536 e-value: 7e-08 hypothetical protein T20K14_190 - Arabidopsis thaliana
Gene Class	Yellow striped leaf
Reference	Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Kleinhofs A (2000) Coordinator's report: integrating molecular and morphological/physiological marker maps. [electronic resource] Barley Genetics Newsletter 32:152-159.
Data Source	Blake, Tom 05.04.19
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	Xcdo537-2 Xcnl.CDO537
Gene Associated with Locus	yst4 (Hordeum)
Full Name	Yellow streak 4
Gene Class	Yellow striped leaf
Locus	CDO537 yst4
URL	Gene report page at the International Database for Barley Genes and Barley Genetic Stocks (NordGen)
Chromosome	2H
Chromosome Arm	2HL
Data Source	Franckowiak, Jerome D. 96.10
Gene Associated with Locus	Az94 (Hordeum)
Locus	Az94 CDO537
Probe	CDO537
Locus	CDO537 Xcdo537-2 Xcnl.CDO537
Synonym	Synonym HAR35_18816 HAR35_21741
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c]
Type	cDNA
Sequence	BE439137 CDO537_WHE2H0091 CDO537_WHE2H0092 CDO537-5 CDO537-3
Linkage Group	[b 2LS] 2
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	2.1
PCR size	2.1